Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.6e-92 342.0 171 100.0
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.6e-78 295.0 170 85.3
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.2e-76 290.0 170 83.5
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.2e-76 290.0 170 84.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.2e-76 290.0 170 84.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.5e-76 287.3 167 83.8
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 7.5e-76 287.3 168 83.9
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.6e-73 279.6 162 82.1
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.9e-72 275.0 167 80.2
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 6.6e-72 274.2 162 83.3
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 6.6e-72 274.2 168 79.8
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 6.6e-72 274.2 167 81.4
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.9e-71 272.7 162 81.5
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.5e-71 272.3 168 77.4
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.8e-70 268.9 162 80.2
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.6e-70 268.5 162 79.6
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.7e-70 268.1 162 79.0
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 8.0e-70 267.3 169 75.7
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.0e-69 266.9 162 79.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.0e-69 266.9 162 77.8
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.0e-69 266.9 162 77.8
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.8e-69 266.2 162 80.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.8e-69 266.2 162 79.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.3e-69 265.8 162 80.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.1e-69 265.4 167 75.4
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.1e-69 265.4 162 75.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.8e-69 264.2 162 78.4
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 6.8e-69 264.2 162 77.2
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.9e-69 263.8 162 77.2
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.2e-68 263.5 162 78.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.2e-68 263.5 162 77.2
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.5e-68 263.1 162 77.8
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.5e-68 263.1 162 78.4
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-68 262.7 162 77.2
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.0e-68 262.7 162 78.4
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.6e-68 262.3 161 78.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 3.4e-68 261.9 162 75.9
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.4e-68 261.9 169 75.7
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.4e-68 261.9 167 74.3
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.4e-68 261.9 167 74.3
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 3.4e-68 261.9 166 75.9
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 4.4e-68 261.5 168 72.6
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.4e-68 261.5 162 75.9
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.8e-68 261.2 167 75.4
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 5.8e-68 261.2 162 77.2
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 7.5e-68 260.8 162 77.2
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 7.5e-68 260.8 162 78.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 7.5e-68 260.8 160 78.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.3e-67 260.0 160 78.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.3e-67 260.0 160 78.1
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.7e-67 259.6 155 80.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.7e-67 259.6 162 75.9
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.7e-67 259.6 167 74.3
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.2e-67 259.2 162 76.5
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.9e-67 258.8 162 75.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 4.9e-67 258.1 162 76.5
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 4.9e-67 258.1 162 75.9
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.9e-66 256.1 166 73.5
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.9e-66 256.1 162 74.7
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.4e-66 255.8 160 76.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.4e-66 255.8 166 75.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.4e-66 255.8 170 69.4
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.2e-66 255.4 161 74.5
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 4.1e-66 255.0 170 72.9
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 4.1e-66 255.0 170 72.9
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 5.4e-66 254.6 162 77.2
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 9.2e-66 253.8 159 76.7
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.6e-65 253.1 167 72.5
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.6e-65 253.1 162 75.9
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 2.0e-65 252.7 164 75.6
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 2.0e-65 252.7 170 72.9
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.0e-65 252.7 162 74.7
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.7e-65 252.3 162 74.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.5e-65 251.9 162 74.7
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.6e-65 251.5 162 74.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 6.0e-65 251.1 162 74.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 7.8e-65 250.8 162 73.5
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.3e-64 250.0 162 72.8
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.3e-64 250.0 162 72.8
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.7e-64 249.6 162 72.8
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.7e-64 249.6 162 72.8
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.7e-64 249.6 162 73.5
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.3e-64 249.2 162 72.8
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.3e-64 249.2 169 71.0
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.0e-64 248.8 162 72.8
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 3.0e-64 248.8 159 74.8
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.0e-64 248.8 169 71.0
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 3.0e-64 248.8 162 72.8
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.0e-64 248.8 162 72.8
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 3.9e-64 248.4 161 73.3
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 8.6e-64 247.3 164 74.4
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.1e-63 246.9 159 74.2
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.5e-63 246.5 159 75.5
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.9e-63 246.1 166 71.1
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.9e-63 246.1 168 72.0
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.3e-63 245.4 162 71.0
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 5.6e-63 244.6 159 74.2
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 7.3e-63 244.2 161 72.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 9.5e-63 243.8 161 70.8
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.2e-62 243.4 167 68.9
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.2e-62 243.4 162 71.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.6e-62 243.0 161 70.8
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.8e-62 242.3 166 72.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 4.7e-62 241.5 161 72.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.1e-61 240.4 159 72.3
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.4e-61 240.0 163 70.6
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.3e-61 239.2 160 71.9
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 2.3e-61 239.2 161 70.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 3.1e-61 238.8 161 72.7
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 3.1e-61 238.8 162 68.5
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.0e-61 238.4 167 69.5
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 5.2e-61 238.0 161 69.6
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 6.8e-61 237.7 162 70.4
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 8.9e-61 237.3 159 71.1
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.2e-60 236.9 168 67.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.5e-60 236.5 159 72.3
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.0e-60 236.1 159 70.4
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 3.4e-60 235.3 167 68.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 5.8e-60 234.6 163 69.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.9e-59 232.3 159 71.7
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.9e-59 231.5 171 66.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.1e-58 230.3 162 67.3
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.4e-58 229.9 161 67.7
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.1e-57 226.1 170 63.5
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-56 223.8 163 65.0
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.0e-56 223.8 169 66.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 5.1e-56 221.5 167 64.7
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 6.6e-56 221.1 163 65.6
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.9e-55 219.5 168 61.3
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.5e-55 219.2 134 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 9.5e-55 217.2 160 63.8
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 8.1e-54 214.2 134 73.9
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-53 213.8 167 64.7
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-53 213.8 167 64.7
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.0e-53 211.8 167 64.1
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.9e-53 210.7 167 63.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.4e-52 208.4 163 63.2
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.7e-51 206.5 181 60.2
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.7e-51 206.5 158 61.4
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.9e-51 205.7 162 65.4
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 8.3e-51 204.1 166 60.8
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.1e-50 203.8 165 58.8
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.4e-50 203.4 161 62.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 2.4e-50 202.6 159 57.2
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 5.4e-50 201.4 161 62.1
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.0e-48 195.7 169 64.5
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.1e-48 194.9 125 76.0
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.1e-48 194.9 159 57.2
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.1e-48 194.9 128 71.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.1e-48 194.9 133 74.4
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.6e-46 189.9 163 60.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.7e-46 188.3 118 77.1
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.4e-45 186.0 118 74.6
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.2e-45 184.9 167 56.3
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 8.9e-45 184.1 132 68.2
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 8.4e-43 177.6 153 60.1
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.1e-42 177.2 125 68.0
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 5.4e-42 174.9 157 51.6
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.1e-42 174.5 162 56.8
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 7.1e-42 174.5 167 56.9
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.3e-39 165.6 162 53.1
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.6e-39 164.9 162 53.1
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.6e-36 154.5 116 68.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.2e-34 149.1 90 76.7
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.7e-33 146.0 97 72.2
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.6e-30 136.7 93 67.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.2e-30 134.8 139 45.3
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 7.6e-28 127.9 94 63.8
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.7e-27 126.7 89 68.5
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 8.7e-24 114.4 74 68.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 8.1e-22 107.8 159 42.1
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.6e-17 93.6 79 57.0
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.7e-11 73.6 179 29.6
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-10 70.5 52 61.5
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.4e-10 70.5 119 38.7
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.5e-10 69.7 172 30.8
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.2e-10 69.3 47 72.3
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.6e-09 65.5 36 80.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 6.1e-09 65.1 36 80.6
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 2.3e-08 63.2 177 29.9
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 5.7e-07 58.5 72 45.8
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 7.4e-07 58.2 75 38.7
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 3.7e-06 55.8 32 75.0


User provided reference genes

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