Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050335 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 8.7e-156 553.5 265 100.0
CSS0032199 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 1.0e-92 344.0 248 73.8
CSS0006745 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 6.6e-87 324.7 239 72.0
Dinv37419 Davidia involucrata HOM05D000595 ORTHO05D004141 2.0e-83 313.2 248 67.7
vmacro00079 Vaccinium macrocarpon HOM05D000595 ORTHO05D004141 4.1e-81 305.4 260 63.1
Actinidia32782 Actinidia chinensis HOM05D000595 ORTHO05D004141 7.8e-80 301.2 248 65.7
Rhsim11G0034700 Rhododendron simsii HOM05D000595 ORTHO05D004141 2.5e-78 296.2 305 54.4
TAR629G2634 Trochodendron aralioides HOM05D000595 ORTHO05D004141 2.6e-75 286.2 249 60.6
GSVIVG01022815001 Vitis vinifera HOM05D000595 ORTHO05D004141 5.8e-75 285.0 249 62.2
Lj8A330G11 Lonicera japonica HOM05D000595 ORTHO05D004141 1.3e-74 283.9 248 59.7
QL02p060306 Quercus lobata HOM05D000595 ORTHO05D004141 5.4e-73 278.5 244 60.2
QL02p060347 Quercus lobata HOM05D000595 ORTHO05D004141 5.4e-73 278.5 245 60.4
Phvul.002G127000 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 9.2e-73 277.7 247 58.3
Nn1g02038 Nelumbo nucifera HOM05D000595 ORTHO05D004141 2.7e-72 276.2 249 57.4
arahy.Tifrunner.gnm1.ann1.BJDV4A Arachis hypogaea HOM05D000595 ORTHO05D004141 3.5e-72 275.8 247 57.9
arahy.Tifrunner.gnm1.ann1.NQH3GN Arachis hypogaea HOM05D000595 ORTHO05D004141 3.5e-72 275.8 247 57.9
Aqoxy3G02180 Aquilegia oxysepala HOM05D000595 ORTHO05D004141 4.6e-72 275.4 249 58.6
Prupe.5G018900 Prunus persica HOM05D000595 ORTHO05D004141 1.0e-71 274.2 249 57.8
Duzib116G0855 Durio zibethinus HOM05D000595 ORTHO05D004141 2.3e-71 273.1 248 58.9
Atru.chr6.1509 Acer truncatum HOM05D000595 ORTHO05D004141 3.0e-71 272.7 249 57.4
AUR62027310 Chenopodium quinoa HOM05D000595 ORTHO05D004141 3.0e-71 272.7 248 59.3
Glyma.04G123900 Glycine max HOM05D000595 ORTHO05D004141 5.1e-71 271.9 247 57.5
TPR.G17247 Trifolium pratense HOM05D000595 ORTHO05D004141 5.1e-71 271.9 247 57.9
Lalb_Chr16g0380651 Lupinus albus HOM05D000595 ORTHO05D004141 8.6e-71 271.2 247 58.3
Manes.15G187301 Manihot esculenta HOM05D000595 ORTHO05D004141 1.1e-70 270.8 247 58.7
VMungo1215G0102 Vigna mungo HOM05D000595 ORTHO05D004141 1.1e-70 270.8 247 57.1
Ca_25085_v3 Cicer arietinum L. HOM05D000595 ORTHO05D004141 1.9e-70 270.0 247 57.1
Cfa012657 Carpinus fangiana HOM05D000595 ORTHO05D004141 2.5e-70 269.6 248 57.3
Duzib116G0431 Durio zibethinus HOM05D000595 ORTHO05D004141 2.5e-70 269.6 248 58.1
Thecc.03G325300 Theobroma cacao HOM05D000595 ORTHO05D004141 3.3e-70 269.2 248 57.3
TPR.G17274 Trifolium pratense HOM05D000595 ORTHO05D004141 3.3e-70 269.2 247 58.3
DCAR_004519 Daucus carota HOM05D000595 ORTHO05D004141 5.6e-70 268.5 248 56.9
PGR042G2013 Punica granatum HOM05D000595 ORTHO05D004141 5.6e-70 268.5 248 56.5
TWI60G0525 Tripterygium wilfordii HOM05D000595 ORTHO05D004141 5.6e-70 268.5 248 56.5
PSO384G3519 Papaver somniferum HOM05D000595 ORTHO05D004141 7.3e-70 268.1 249 56.6
Psat2g142920 Pisum sativum HOM05D000595 ORTHO05D004141 7.3e-70 268.1 280 51.4
CANSAT21G1418 Cannabis sativa HOM05D000595 ORTHO05D004141 9.5e-70 267.7 248 56.9
CiPaw.11G104000 Carya illinoinensis HOM05D000595 ORTHO05D004141 9.5e-70 267.7 245 57.6
Gohir.D02G109400 Gossypium hirsutum HOM05D000595 ORTHO05D004141 9.5e-70 267.7 248 58.1
Potri.001G129600 Populus trichocarpa HOM05D000595 ORTHO05D004141 1.2e-69 267.3 248 57.3
HanXRQChr17g0537211 Helianthus annuus HOM05D000595 ORTHO05D004141 1.6e-69 266.9 248 56.9
Phvul.002G126900 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 1.6e-69 266.9 244 57.8
Gorai.005G124100 Gossypium raimondii HOM05D000595 ORTHO05D004141 3.6e-69 265.8 248 57.7
PSO782G2105 Papaver somniferum HOM05D000595 ORTHO05D004141 4.7e-69 265.4 245 55.1
Solyc08g075530.3 Solanum lycopersicum HOM05D000595 ORTHO05D004141 8.1e-69 264.6 248 54.4
Gohir.A02G091200 Gossypium hirsutum HOM05D000595 ORTHO05D004141 1.1e-68 264.2 248 56.9
Lalb_Chr09g0325191 Lupinus albus HOM05D000595 ORTHO05D004141 1.1e-68 264.2 247 56.7
Medtr5g026610 Medicago truncatula HOM05D000595 ORTHO05D004141 2.3e-68 263.1 247 55.1
Peaxi162Scf00053g00618 Petunia axillaris HOM05D000595 ORTHO05D004141 2.3e-68 263.1 248 56.0
Sopen08g024190 Solanum pennellii HOM05D000595 ORTHO05D004141 2.3e-68 263.1 248 54.0
ECA246G1180 Erigeron canadensis HOM05D000595 ORTHO05D004141 4.0e-68 262.3 247 57.5
MD00G1148100 Malus domestica HOM05D000595 ORTHO05D004141 4.0e-68 262.3 248 56.0
Sabra01G0099900 Salix brachista HOM05D000595 ORTHO05D004141 5.2e-68 261.9 245 57.1
PSO384G3949 Papaver somniferum HOM05D000595 ORTHO05D004141 6.8e-68 261.5 248 56.0
RcHm_v2.0_Chr7g0213911 Rosa chinensis HOM05D000595 ORTHO05D004141 8.9e-68 261.2 248 55.6
Sc07g0008260 Simmondsia chinensis HOM05D000595 ORTHO05D004141 1.2e-67 260.8 248 55.6
RcHm_v2.0_Chr7g0213851 Rosa chinensis HOM05D000595 ORTHO05D004141 3.4e-67 259.2 248 55.6
MSTRG.24716 Avicennia marina HOM05D000595 ORTHO05D004141 4.4e-67 258.8 248 56.5
CsaV3_3G000980 Cucumis sativus L. HOM05D000595 ORTHO05D004141 7.5e-67 258.1 248 54.8
TPR.G39643 Trifolium pratense HOM05D000595 ORTHO05D004141 1.3e-66 257.3 254 55.5
COL.COLO4_24689 Corchorus olitorius HOM05D000595 ORTHO05D004141 2.9e-66 256.1 254 54.7
SalBow4G2071 Salvia bowleyana HOM05D000595 ORTHO05D004141 3.7e-66 255.8 251 56.6
ClCG10G000900 Citrullus lanatus HOM05D000595 ORTHO05D004141 4.9e-66 255.4 248 54.8
Eucgr.E01212 Eucalyptus grandis HOM05D000595 ORTHO05D004141 4.9e-66 255.4 248 53.6
CAN.G1731.4 Capsicum annuum HOM05D000595 ORTHO05D004141 6.4e-66 255.0 248 52.4
Psat2g142760 Pisum sativum HOM05D000595 ORTHO05D004141 6.4e-66 255.0 247 54.7
ECA246G0927 Erigeron canadensis HOM05D000595 ORTHO05D004141 1.9e-65 253.4 248 52.4
Ciclev10000152m.g Citrus clementina HOM05D000595 ORTHO05D004141 3.2e-65 252.7 248 55.2
Eucgr.E01209 Eucalyptus grandis HOM05D000595 ORTHO05D004141 4.1e-65 252.3 248 53.2
DCAR_004520 Daucus carota HOM05D000595 ORTHO05D004141 5.4e-65 251.9 248 53.6
FAN13G2264 Fragaria x ananassa HOM05D000595 ORTHO05D004141 5.4e-65 251.9 245 54.7
Sed0017541 Sechium edule HOM05D000595 ORTHO05D004141 9.2e-65 251.1 248 53.2
THA.LOC104822230 Tarenaya hassleriana HOM05D000595 ORTHO05D004141 1.6e-64 250.4 248 52.8
Migut.E01361 Erythranthe guttata HOM05D000595 ORTHO05D004141 2.1e-64 250.0 248 54.4
MELO3C013786.2 Cucumis melo HOM05D000595 ORTHO05D004141 2.7e-64 249.6 244 54.1
Lsat_1_v5_gn_3_23561 Lactuca sativa HOM05D000595 ORTHO05D004141 4.6e-64 248.8 248 52.8
Ciclev10000404m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.7e-63 246.9 248 55.2
MBI04_g21145_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D004141 2.3e-63 246.5 244 56.1
FvH4_5g24150 Fragaria vesca HOM05D000595 ORTHO05D004141 2.5e-62 243.0 245 53.5
Migut.A00539 Erythranthe guttata HOM05D000595 ORTHO05D004141 3.3e-62 242.7 247 53.8
Hund14328 Selenicereus undatus HOM05D000595 ORTHO05D004141 3.3e-62 242.7 182 63.7
AUR62007422 Chenopodium quinoa HOM05D000595 ORTHO05D004141 4.3e-62 242.3 165 70.9
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 5.6e-62 241.9 165 69.7
Manes.17G004600 Manihot esculenta HOM05D000595 ORTHO05D004141 7.3e-62 241.5 263 52.1
Nitab4.5_0000985g0070 Nicotiana tabacum HOM05D000595 ORTHO05D004141 2.8e-61 239.6 161 70.8
A01p31400 Brassica napus HOM05D000595 ORTHO05D004141 3.6e-61 239.2 249 50.6
Thhalv10019990m.g Eutrema salsugineum HOM05D000595 ORTHO05D004141 4.7e-61 238.8 249 50.2
Lj2g0003822 Lotus japonicus HOM05D000595 ORTHO05D004141 8.1e-61 238.0 246 53.7
Nitab4.5_0000030g0360 Nicotiana tabacum HOM05D000595 ORTHO05D004141 8.1e-61 238.0 161 70.2
AL3G38380 Arabidopsis lyrata HOM05D000595 ORTHO05D004141 1.8e-60 236.9 248 50.0
Oeu042200.2 Olea europaea HOM05D000595 ORTHO05D004141 3.1e-60 236.1 240 52.9
Carub.0003s2390 Capsella rubella HOM05D000595 ORTHO05D004141 4.0e-60 235.7 248 50.0
ATR0829G165 Amborella trichopoda HOM05D000595 ORTHO05D004141 6.8e-60 235.0 247 49.8
Cc08_g05420 Coffea canephora HOM05D000595 ORTHO05D004141 6.8e-60 235.0 228 54.8
C01p39990 Brassica napus HOM05D000595 ORTHO05D004141 1.2e-59 234.2 249 50.6
A01p31410 Brassica napus HOM05D000595 ORTHO05D004141 1.3e-58 230.7 248 48.0
C01p40000 Brassica napus HOM05D000595 ORTHO05D004141 1.3e-58 230.7 248 48.4
Oeu042228.5 Olea europaea HOM05D000595 ORTHO05D004141 2.9e-58 229.6 225 54.7
BolC1t03957H Brassica oleracea HOM05D000595 ORTHO05D004141 3.8e-58 229.2 248 48.4
Oeu042195.1 Olea europaea HOM05D000595 ORTHO05D004141 1.1e-57 227.6 203 58.6
HPP92_020874 Vanilla planifolia HOM05D000595 ORTHO05D004141 1.1e-57 227.6 247 48.6
BraA01t03266Z Brassica rapa HOM05D000595 ORTHO05D004141 1.4e-57 227.3 248 47.6
Sp3g21350 Schrenkiella parvula HOM05D000595 ORTHO05D004141 3.2e-57 226.1 248 48.0
Aa31LG10G5270 Aethionema arabicum HOM05D000595 ORTHO05D004141 7.1e-57 224.9 248 48.0
Carub.0003s2391 Capsella rubella HOM05D000595 ORTHO05D004141 9.2e-57 224.6 248 47.6
CDE01G0028 Ceratophyllum demersum HOM05D000595 ORTHO05D004141 4.6e-56 222.2 249 49.0
Zm00001eb305980 Zea mays HOM05D000595 ORTHO05D004141 7.8e-56 221.5 248 50.0
AT3G23640 Arabidopsis thaliana HOM05D000595 ORTHO05D004141 2.3e-55 219.9 248 46.8
EL10Ac5g11905 Beta vulgaris HOM05D000595 ORTHO05D004141 8.7e-55 218.0 249 49.0
Zm00001eb096920 Zea mays HOM05D000595 ORTHO05D004141 8.7e-55 218.0 248 49.6
Os07g0421300 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 1.6e-53 213.8 247 47.8
BcaB04g20429 Brassica carinata HOM05D000595 ORTHO05D004141 8.1e-53 211.5 244 48.4
Lj8A331G39 Lonicera japonica HOM05D000595 ORTHO05D004141 3.1e-52 209.5 141 74.5
Os07g0420700 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 9.0e-52 208.0 248 47.2
Ciclev10011016m.g Citrus clementina HOM05D000595 ORTHO05D004141 3.4e-51 206.1 163 65.0
Oeu042206.1 Olea europaea HOM05D000595 ORTHO05D004141 7.6e-51 204.9 229 48.0
Haze_07994 Corylus avellana HOM05D000595 ORTHO05D004141 9.9e-51 204.5 162 63.6
BcaB04g20431 Brassica carinata HOM05D000595 ORTHO05D004141 7.8e-48 194.9 216 47.7
Oeu042203.1 Olea europaea HOM05D000595 ORTHO05D004141 6.6e-47 191.8 215 47.9
Sp3g21340 Schrenkiella parvula HOM05D000595 ORTHO05D004141 2.4e-44 183.3 248 41.5
Ca_25052_v3 Cicer arietinum L. HOM05D002908 ORTHO05D009379 3.1e-44 183.0 218 46.8
Oeu042230.1 Olea europaea HOM05D000595 ORTHO05D004141 4.0e-44 182.6 177 54.2
SGA_v2.0_scaffold89G27418 Striga asiatica HOM05D000595 ORTHO05D004141 6.4e-42 175.3 237 42.2
Pp3c13_11140 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.9e-41 173.7 247 39.3
Pp3c3_9200 Physcomitrium patens HOM05D000595 ORTHO05D004141 7.1e-41 171.8 242 39.3
Pp3c16_2470 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.3e-39 167.5 244 39.8
SMO116G0166 Selaginella moellendorffii HOM05D000595 ORTHO05D004141 1.1e-38 164.5 244 38.5
Pp3c5_4460 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.9e-38 163.7 234 39.3
CARHR099600 Cardamine hirsuta HOM05D000595 ORTHO05D004141 4.3e-38 162.5 184 47.8
AagrBONN_evm.TU.Sc2ySwM_228.2586 Anthoceros agrestis HOM05D000595 ORTHO05D004141 9.6e-38 161.4 230 39.1
Pp3c4_24030 Physcomitrium patens HOM05D000595 ORTHO05D004141 9.6e-38 161.4 245 37.1
Mapoly0135s0001 Marchantia polymorpha HOM05D000595 ORTHO05D004141 8.1e-37 158.3 250 35.6
Mapoly0633s0002 Marchantia polymorpha HOM05D000595 ORTHO05D004141 3.1e-36 156.4 250 35.2
AagrBONN_evm.TU.Sc2ySwM_344.2687 Anthoceros agrestis HOM05D000595 ORTHO05D004141 1.5e-35 154.1 249 36.9
Oeu042205.1 Olea europaea HOM05D000595 ORTHO05D004141 3.2e-33 146.4 231 39.4
GSVIVG01036947001 Vitis vinifera HOM05D000595 ORTHO05D004141 1.0e-31 141.4 102 69.6
Cfa012654 Carpinus fangiana HOM05D000595 ORTHO05D004141 1.1e-30 137.9 114 63.2
Cpa.g.sc71.54 Carica papaya HOM05D000595 ORTHO05D004141 9.6e-30 134.8 111 62.2
SGA_v2.0_scaffold111G31354 Striga asiatica HOM05D000595 ORTHO05D004141 1.4e-25 120.9 122 49.2
GSVIVG01013642001 Vitis vinifera HOM05D000595 ORTHO05D004141 4.2e-17 92.8 89 57.3
BraA01t03265Z Brassica rapa HOM05D000595 ORTHO05D004141 1.4e-15 87.8 117 43.6
VMungo1215G1352 Vigna mungo HOM05D000595 ORTHO05D004141 5.7e-06 55.8 30 83.3


User provided reference genes

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