Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.5e-101 372.9 194 100.0
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.5e-101 372.9 194 100.0
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 2.0e-77 292.7 194 81.4
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 7.5e-72 274.2 194 77.3
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 3.1e-70 268.9 174 82.8
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 2.0e-69 266.2 203 74.9
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 3.5e-69 265.4 171 79.5
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 5.9e-69 264.6 160 83.1
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 5.9e-69 264.6 174 78.7
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 7.7e-69 264.2 194 73.7
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 1.3e-68 263.5 201 72.6
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 2.2e-68 262.7 160 81.9
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.2e-68 262.7 154 84.4
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 8.5e-68 260.8 204 71.6
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 1.5e-67 260.0 197 74.1
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 1.9e-67 259.6 191 73.8
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 1.9e-67 259.6 196 71.4
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 3.2e-67 258.8 157 84.1
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 3.2e-67 258.8 160 81.9
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 4.2e-67 258.5 205 69.8
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 5.5e-67 258.1 188 73.9
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 5.5e-67 258.1 197 73.1
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 9.4e-67 257.3 197 73.6
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 9.4e-67 257.3 205 70.7
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 1.2e-66 256.9 206 70.4
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 1.6e-66 256.5 203 70.4
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 2.1e-66 256.1 160 81.2
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 2.1e-66 256.1 198 70.7
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 2.7e-66 255.8 201 70.1
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 3.6e-66 255.4 205 70.2
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 4.7e-66 255.0 160 80.6
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 4.7e-66 255.0 203 71.4
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 4.7e-66 255.0 198 72.7
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 1.4e-65 253.4 202 72.3
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 3.0e-65 252.3 171 76.0
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 5.2e-65 251.5 171 77.2
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 8.8e-65 250.8 174 77.6
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 1.5e-64 250.0 167 77.2
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 1.5e-64 250.0 167 77.2
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 3.4e-64 248.8 177 75.1
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 4.4e-64 248.4 203 71.9
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 5.7e-64 248.1 202 67.8
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 7.5e-64 247.7 190 72.1
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 9.8e-64 247.3 199 71.9
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 9.8e-64 247.3 199 71.9
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 1.3e-63 246.9 197 71.6
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 2.8e-63 245.7 163 80.4
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 3.7e-63 245.4 201 71.1
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 3.7e-63 245.4 172 76.2
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 3.7e-63 245.4 194 70.1
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 3.7e-63 245.4 162 80.2
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 6.3e-63 244.6 188 71.8
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 6.3e-63 244.6 199 70.9
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 8.3e-63 244.2 180 69.4
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 8.3e-63 244.2 203 68.5
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 1.1e-62 243.8 158 80.4
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 7.0e-62 241.1 171 73.1
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 9.1e-62 240.7 193 72.0
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 1.6e-61 240.0 192 70.3
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 1.6e-61 240.0 188 71.8
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 1.6e-61 240.0 199 67.3
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 1.6e-61 240.0 197 67.5
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 2.0e-61 239.6 194 69.6
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 2.0e-61 239.6 198 70.2
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 4.5e-61 238.4 187 70.6
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 1.0e-60 237.3 125 91.2
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 1.7e-60 236.5 200 68.5
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 1.7e-60 236.5 196 69.4
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 3.8e-60 235.3 195 69.2
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 5.0e-60 235.0 201 68.2
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 8.5e-60 234.2 189 68.8
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 1.1e-59 233.8 135 84.4
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 1.1e-59 233.8 135 84.4
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 1.1e-59 233.8 135 84.4
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 1.1e-59 233.8 135 84.4
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 1.5e-59 233.4 207 67.1
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 2.5e-59 232.6 200 66.0
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 2.5e-59 232.6 169 73.4
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 2.5e-59 232.6 192 65.1
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 3.2e-59 232.3 195 66.2
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 1.2e-58 230.3 195 71.8
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 4.7e-58 228.4 163 73.0
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 6.1e-58 228.0 170 71.8
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 2.3e-57 226.1 194 66.5
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 3.0e-57 225.7 128 84.4
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 1.2e-56 223.8 198 63.1
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 2.0e-56 223.0 202 66.8
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 2.6e-56 222.6 202 66.8
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 7.5e-56 221.1 184 66.3
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 4.9e-55 218.4 121 86.8
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 8.3e-55 217.6 202 63.4
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 1.3e-52 210.3 194 62.9
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 5.0e-52 208.4 115 84.3
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 8.6e-52 207.6 189 63.5
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 9.5e-51 204.1 140 72.1
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 4.0e-49 198.7 135 76.3
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 9.8e-48 194.1 184 58.2
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 1.3e-47 193.7 132 67.4
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 4.9e-47 191.8 113 80.5
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 1.8e-46 189.9 185 55.7
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 2.4e-46 189.5 165 60.6
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 1.0e-44 184.1 114 74.6
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 2.3e-44 183.0 113 77.0
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 2.3e-44 183.0 121 69.4
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 3.3e-43 179.1 170 58.2
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 5.2e-41 171.8 194 54.6
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 5.0e-36 155.2 109 61.5
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 2.5e-35 152.9 196 51.0
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 2.4e-22 109.8 129 39.5
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 2.8e-18 96.3 113 40.7
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 6.9e-17 91.7 52 78.8
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 8.9e-17 91.3 106 45.3
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 7.3e-11 71.6 181 26.5


User provided reference genes

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