Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.5e-65 251.5 132 100.0
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.0e-57 224.2 152 81.6
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.0e-57 224.2 152 81.6
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.7e-54 214.9 155 78.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.1e-49 199.1 152 71.7
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.3e-48 195.7 152 69.7
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.3e-48 195.7 152 69.1
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.3e-47 191.8 165 64.2
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 6.2e-46 187.6 152 66.4
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.4e-45 186.4 152 66.4
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 4.0e-45 184.9 151 65.6
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 5.3e-45 184.5 151 66.2
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 4.5e-44 181.4 152 63.2
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.7e-43 179.5 152 63.2
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.9e-43 178.7 152 63.8
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 4.9e-43 177.9 151 64.2
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 6.5e-43 177.6 152 62.5
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.4e-42 176.4 152 61.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.5e-42 175.6 152 61.8
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 2.5e-42 175.6 151 62.3
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 3.2e-42 175.3 152 61.8
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 5.5e-42 174.5 151 60.9
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 7.1e-42 174.1 152 62.5
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 9.3e-42 173.7 153 62.1
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.2e-41 173.3 152 59.9
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.6e-41 172.9 152 60.5
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.6e-41 172.9 152 60.5
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 2.7e-41 172.2 152 61.2
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.6e-41 171.4 130 66.2
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.0e-40 170.2 152 59.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.3e-40 169.9 152 62.5
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.3e-40 169.9 152 61.2
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.3e-40 169.9 152 59.9
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 2.3e-40 169.1 152 57.9
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 3.9e-40 168.3 152 59.9
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 5.1e-40 167.9 152 59.2
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 6.7e-40 167.5 152 59.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 6.7e-40 167.5 152 59.2
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.1e-39 166.8 153 58.8
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.5e-39 166.4 152 58.6
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.5e-39 165.6 152 59.9
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.3e-39 165.2 152 61.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 5.7e-39 164.5 152 59.2
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 5.7e-39 164.5 151 59.6
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.4e-39 164.1 152 59.2
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 9.7e-39 163.7 151 60.3
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 9.7e-39 163.7 152 56.6
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 2.2e-38 162.5 152 56.6
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.8e-38 162.2 152 56.6
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 2.8e-38 162.2 153 56.9
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.8e-38 162.2 153 56.9
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.8e-38 162.2 152 56.6
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 4.8e-38 161.4 152 55.9
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 8.2e-38 160.6 153 56.2
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 8.2e-38 160.6 151 59.6
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.4e-37 159.8 152 55.9
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.8e-37 159.5 152 55.9
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.8e-37 159.5 152 55.9
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 2.4e-37 159.1 152 55.3
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.4e-37 159.1 152 57.9
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.4e-37 159.1 152 55.9
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.3e-37 157.9 88 94.3
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.3e-37 157.9 152 56.6
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 5.3e-37 157.9 153 54.9
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 6.9e-37 157.5 152 55.9
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.2e-36 156.8 152 54.6
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.2e-36 156.8 153 56.2
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 2.6e-36 155.6 151 57.6
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.6e-36 155.6 151 57.6
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.6e-36 155.6 151 57.6
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.4e-36 155.2 151 57.6
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 3.4e-36 155.2 152 54.6
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.7e-35 152.9 152 55.3
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.7e-35 152.9 152 55.9
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.2e-35 152.5 152 53.9
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 2.2e-35 152.5 152 56.6
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.8e-35 151.8 151 56.3
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 3.8e-35 151.8 153 53.6
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 5.0e-35 151.4 152 54.6
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 6.5e-35 151.0 152 52.6
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 6.5e-35 151.0 152 57.2
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.1e-34 150.2 152 53.9
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.4e-34 149.8 152 54.6
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.9e-34 149.4 154 53.9
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.9e-34 149.4 152 55.9
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.2e-34 148.7 152 54.6
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 2.1e-33 146.0 152 55.3
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.7e-33 145.6 152 55.3
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.6e-33 145.2 152 54.6
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 3.6e-33 145.2 130 61.5
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 6.1e-33 144.4 152 52.6
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.9e-33 144.1 123 67.5
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.0e-32 143.7 152 50.7
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.3e-32 143.3 152 54.6
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.3e-32 143.3 151 50.3
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.3e-32 142.5 152 52.6
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 3.0e-32 142.1 152 54.6
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.9e-32 141.7 88 84.1
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.9e-32 141.7 154 50.6
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 5.1e-32 141.4 153 54.9
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 8.7e-32 140.6 152 52.0
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 8.7e-32 140.6 152 49.3
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.5e-31 139.8 154 53.9
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.9e-31 139.4 153 52.9
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.9e-31 139.4 152 52.0
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.5e-31 139.0 152 51.3
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.3e-31 138.7 153 54.2
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 3.3e-31 138.7 153 54.2
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 4.3e-31 138.3 152 52.6
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 4.3e-31 138.3 152 52.0
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 7.4e-31 137.5 190 43.7
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.3e-30 136.7 151 51.7
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.7e-30 136.3 152 52.0
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.7e-30 136.3 152 52.0
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.2e-30 136.0 152 51.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.2e-30 136.0 152 51.3
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 2.2e-30 136.0 152 51.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.2e-30 136.0 152 51.3
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.2e-30 136.0 152 51.3
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 2.2e-30 136.0 152 50.7
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 3.7e-30 135.2 152 51.3
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 3.7e-30 135.2 152 52.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 6.3e-30 134.4 152 51.3
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 6.3e-30 134.4 152 46.7
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 6.3e-30 134.4 152 46.7
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 8.2e-30 134.0 152 50.0
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-29 132.9 152 50.7
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.1e-29 132.1 152 50.7
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 5.3e-29 131.3 152 50.7
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.2e-28 130.2 123 61.0
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 2.0e-28 129.4 152 47.4
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.6e-28 129.0 130 53.8
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 7.7e-28 127.5 189 43.4
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.2e-27 125.9 190 43.7
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 2.9e-27 125.6 187 44.4
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 2.9e-27 125.6 148 45.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.0e-27 124.8 100 75.0
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.5e-27 124.4 88 71.6
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-26 123.2 88 71.6
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.4e-26 123.2 88 71.6
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.5e-26 122.5 166 47.0
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.5e-26 121.3 88 69.3
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.1e-25 117.9 88 69.3
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 3.0e-24 115.5 236 33.5
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.4e-23 111.7 88 62.5
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 9.7e-23 110.5 136 49.3
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 2.2e-22 109.4 152 46.1
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.1e-21 107.1 79 68.4
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.4e-20 102.1 130 47.7
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 4.5e-20 101.7 152 38.2
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.0e-19 100.5 150 38.7
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.9e-19 99.0 149 40.9
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 3.2e-18 95.5 152 36.2
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 4.2e-18 95.1 144 37.5
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.6e-17 93.2 149 38.9
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.1e-17 92.8 150 36.7
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.1e-17 91.3 71 64.8
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 6.1e-17 91.3 262 29.8
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 8.8e-16 87.4 150 34.7
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.1e-15 87.0 152 33.6
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 7.4e-15 84.3 68 58.8
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 4.1e-13 78.6 75 52.0
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.1e-13 77.4 44 84.1
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.1e-13 77.4 44 84.1
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.0e-11 73.9 150 30.0
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 7.2e-10 67.8 43 69.8
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 3.6e-09 65.5 85 38.8
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.6e-09 65.5 43 65.1
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.7e-06 56.6 131 31.3


User provided reference genes

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