Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 3.4e-89 331.6 169 100.0
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 3.2e-71 271.9 141 99.3
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 1.7e-51 206.5 142 78.2
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 5.0e-48 194.9 158 68.4
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 4.5e-41 171.8 144 63.2
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 8.6e-40 167.5 139 64.7
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.5e-39 166.8 143 58.0
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.9e-39 166.4 132 67.4
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 9.5e-39 164.1 139 66.2
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.1e-38 162.9 140 62.1
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.4e-37 160.2 141 58.9
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.4e-37 160.2 139 60.4
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.8e-37 159.8 141 58.9
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.3e-37 159.5 143 61.5
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 4.0e-37 158.7 139 59.7
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 6.8e-37 157.9 142 61.3
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.5e-36 156.8 138 60.9
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.5e-36 156.8 143 60.1
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 2.0e-36 156.4 141 57.4
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.0e-36 156.4 144 61.1
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 2.0e-36 156.4 141 61.0
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.6e-36 156.0 143 60.1
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.6e-36 156.0 143 60.1
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 2.6e-36 156.0 137 61.3
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 2.6e-36 156.0 137 61.3
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 2.6e-36 156.0 142 61.3
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 5.7e-36 154.8 142 61.3
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 7.5e-36 154.5 128 61.7
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 7.5e-36 154.5 139 58.3
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 9.8e-36 154.1 96 79.2
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 9.8e-36 154.1 133 60.2
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 9.8e-36 154.1 136 61.8
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 6.3e-35 151.4 141 57.4
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 8.3e-35 151.0 137 60.6
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.1e-34 150.6 141 57.4
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.4e-34 150.2 143 56.6
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.4e-34 150.2 136 58.1
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.4e-34 150.2 140 58.6
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.8e-34 149.8 144 56.2
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 4.1e-34 148.7 139 55.4
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 4.1e-34 148.7 159 52.8
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 4.1e-34 148.7 142 57.0
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 5.4e-34 148.3 141 57.4
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 9.2e-34 147.5 131 59.5
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 9.2e-34 147.5 139 56.1
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 2.0e-33 146.4 137 57.7
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 7.8e-33 144.4 137 56.2
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.0e-32 144.1 139 57.6
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.3e-32 143.7 141 56.7
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.3e-32 142.9 132 60.6
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 2.9e-32 142.5 140 52.1
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 2.9e-32 142.5 128 54.7
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 8.6e-32 141.0 135 55.6
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.1e-31 140.6 135 54.1
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.5e-31 139.4 142 56.3
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 7.3e-31 137.9 147 55.1
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 7.3e-31 137.9 128 57.0
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 9.5e-31 137.5 137 55.5
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.2e-30 137.1 139 54.7
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.2e-30 137.1 139 54.7
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.1e-30 136.3 134 55.2
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 2.1e-30 136.3 139 54.0
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.7e-30 135.2 137 51.1
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 4.7e-30 135.2 139 52.5
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 6.1e-30 134.8 128 54.7
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 6.1e-30 134.8 128 57.8
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 6.1e-30 134.8 134 53.0
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 8.0e-30 134.4 138 50.0
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.0e-29 134.0 142 53.5
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.4e-29 133.7 137 50.4
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.8e-29 133.3 136 55.9
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 2.3e-29 132.9 130 56.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 3.1e-29 132.5 133 51.1
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 3.1e-29 132.5 129 55.0
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 4.0e-29 132.1 138 52.2
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 5.2e-29 131.7 133 51.1
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 5.2e-29 131.7 140 50.7
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 6.8e-29 131.3 128 53.1
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 8.9e-29 131.0 139 51.8
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 1.2e-28 130.6 128 54.7
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 2.0e-28 129.8 137 50.4
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 2.0e-28 129.8 128 53.9
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 2.6e-28 129.4 132 50.0
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 2.6e-28 129.4 133 52.6
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 9.8e-28 127.5 139 53.2
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.7e-27 126.7 119 58.0
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 1.7e-27 126.7 131 50.4
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.7e-27 126.7 139 52.5
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.7e-27 126.7 124 55.6
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.2e-27 126.3 139 51.1
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 2.2e-27 126.3 132 52.3
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 2.2e-27 126.3 135 55.6
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 1.1e-26 124.0 140 50.0
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 1.4e-26 123.6 145 48.3
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.9e-26 123.2 136 52.2
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 2.4e-26 122.9 142 50.0
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 2.4e-26 122.9 141 48.9
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 3.2e-26 122.5 146 48.6
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 3.2e-26 122.5 138 47.8
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 3.2e-26 122.5 85 71.8
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 4.1e-26 122.1 138 50.7
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 4.1e-26 122.1 104 58.7
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 7.0e-26 121.3 137 50.4
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 7.0e-26 121.3 139 51.1
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 9.2e-26 120.9 84 67.9
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 9.2e-26 120.9 144 50.0
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 9.2e-26 120.9 142 48.6
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 1.2e-25 120.6 130 50.0
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.0e-25 119.8 138 47.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 2.7e-25 119.4 137 49.6
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.7e-25 119.4 138 48.6
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.5e-25 119.0 140 46.4
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.3e-24 116.3 137 48.2
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.3e-24 116.3 142 48.6
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 3.0e-24 115.9 136 46.3
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.0e-24 115.9 140 44.3
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 3.0e-24 115.9 139 47.5
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 8.6e-24 114.4 135 45.2
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 1.5e-23 113.6 80 67.5
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.5e-23 113.6 111 54.1
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.5e-23 112.8 84 61.9
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 7.3e-23 111.3 146 43.8
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 7.3e-23 111.3 111 53.2
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 9.5e-23 110.9 103 52.4
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 3.6e-22 109.0 135 45.9
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 4.7e-22 108.6 134 44.0
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.7e-22 108.6 131 47.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 1.1e-21 107.5 135 45.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.4e-21 107.1 130 43.1
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.3e-21 106.3 121 43.0
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 4.0e-21 105.5 138 44.9
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 2.6e-20 102.8 138 44.9
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 1.3e-19 100.5 133 45.1
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 2.2e-19 99.8 85 50.6
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 8.3e-19 97.8 141 41.1
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 1.1e-18 97.4 223 33.2
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 7.0e-18 94.7 118 42.4
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.3e-16 89.7 109 41.3
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 4.3e-15 85.5 89 47.2
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.6e-14 83.6 134 38.1
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 2.1e-14 83.2 102 49.0
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 2.6e-12 76.3 135 37.0
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 3.4e-12 75.9 56 62.5
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.4e-12 75.9 158 38.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.4e-12 75.5 56 62.5
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 8.3e-11 71.2 40 75.0
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 4.1e-10 68.9 37 81.1
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 9.2e-10 67.8 41 70.7
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 2.1e-09 66.6 95 42.1
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 2.7e-09 66.2 89 47.2
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 4.6e-09 65.5 35 80.0
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 4.6e-09 65.5 96 45.8
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 6.0e-09 65.1 93 41.9
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 1.7e-08 63.5 99 41.4
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 6.6e-08 61.6 63 50.8
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 8.6e-08 61.2 88 36.4
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 1.1e-07 60.8 134 34.3
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.1e-07 60.8 44 54.5
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.1e-07 60.8 101 37.6
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.9e-07 60.1 120 28.3
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.5e-07 59.7 42 69.0
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 3.3e-07 59.3 31 83.9
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 3.3e-07 59.3 84 36.9
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 4.7e-06 55.5 96 39.6
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 6.2e-06 55.1 99 28.3


User provided reference genes

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