Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.1e-252 873.6 424 100.0
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 7.3e-181 637.5 398 83.2
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 3.2e-144 515.8 400 69.8
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 9.4e-144 514.2 399 69.4
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 5.1e-142 508.4 424 64.9
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.2e-135 487.3 350 70.9
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 2.8e-132 476.1 349 69.3
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.9e-129 466.1 386 65.5
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 3.8e-129 465.7 390 63.6
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.9e-128 463.4 380 64.2
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.2e-127 460.7 396 62.6
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.7e-127 459.5 390 62.8
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.1e-127 458.4 348 68.4
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.8e-126 456.8 376 64.9
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 3.0e-126 456.1 348 68.1
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 5.2e-126 455.3 402 61.2
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 2.6e-125 453.0 352 65.9
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 4.4e-125 452.2 381 61.4
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 4.4e-125 452.2 378 63.5
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 4.4e-125 452.2 384 61.7
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 5.7e-125 451.8 352 67.6
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 1.8e-123 446.8 374 61.5
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.8e-123 446.8 374 61.5
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 3.1e-123 446.0 374 65.0
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 5.3e-123 445.3 352 66.2
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.6e-122 443.7 348 65.8
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 3.5e-122 442.6 376 62.8
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 3.5e-122 442.6 350 65.1
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 3.5e-122 442.6 380 62.4
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 2.9e-121 439.5 348 65.5
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 5.0e-121 438.7 350 64.6
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 6.5e-121 438.3 377 62.6
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 1.5e-120 437.2 375 61.1
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 2.5e-120 436.4 374 61.5
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 9.4e-120 434.5 376 61.4
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.2e-119 434.1 352 63.6
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.6e-119 433.7 350 62.9
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 2.7e-119 433.0 370 62.2
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.0e-119 431.4 385 59.0
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.0e-118 431.0 360 61.7
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.0e-118 431.0 351 63.8
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 2.3e-118 429.9 354 62.7
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 2.3e-118 429.9 372 61.3
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 5.2e-118 428.7 345 64.6
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.7e-118 428.3 363 62.5
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 6.7e-118 428.3 347 62.8
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.5e-117 427.2 364 63.2
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.0e-117 426.8 345 63.8
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 2.0e-117 426.8 363 62.3
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 2.0e-117 426.8 377 60.2
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 5.7e-117 425.2 359 63.0
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 5.7e-117 425.2 352 62.5
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 7.5e-117 424.9 382 59.4
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 7.5e-117 424.9 349 62.8
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 7.5e-117 424.9 349 62.8
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 7.5e-117 424.9 388 60.1
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 9.7e-117 424.5 354 62.1
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 1.7e-116 423.7 345 63.2
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 2.2e-116 423.3 349 62.2
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.2e-116 423.3 381 59.1
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 2.8e-116 422.9 359 62.1
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 3.7e-116 422.5 347 63.1
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 4.8e-116 422.2 349 62.2
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 4.8e-116 422.2 349 62.2
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 6.3e-116 421.8 368 60.6
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 6.3e-116 421.8 378 61.4
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 6.3e-116 421.8 388 59.5
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 8.2e-116 421.4 351 64.7
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.4e-115 420.6 370 61.6
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.4e-115 420.6 353 62.6
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 2.4e-115 419.9 348 62.4
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 3.1e-115 419.5 352 62.5
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 9.1e-115 417.9 370 59.2
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 9.1e-115 417.9 349 62.5
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.2e-114 417.5 361 60.7
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 1.6e-114 417.2 354 61.3
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 3.5e-114 416.0 350 62.3
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.9e-114 415.2 409 56.5
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.0e-113 414.5 377 59.9
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 2.2e-113 413.3 376 59.0
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 5.0e-113 412.1 352 61.9
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 8.5e-113 411.4 349 61.6
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.1e-112 411.0 347 60.8
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 1.5e-112 410.6 384 58.9
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 7.2e-112 408.3 430 53.5
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 6.1e-111 405.2 347 62.2
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 8.0e-111 404.8 346 61.0
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.4e-110 404.1 398 53.5
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.4e-110 404.1 347 60.2
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 2.3e-110 403.3 308 66.6
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.0e-110 402.9 387 56.3
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.0e-109 400.2 358 61.2
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 7.5e-109 398.3 356 59.8
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.3e-108 397.5 351 60.4
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 6.3e-108 395.2 354 58.5
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 1.4e-107 394.0 431 53.6
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 2.4e-107 393.3 361 56.8
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.0e-106 390.2 346 58.1
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 1.3e-105 387.5 351 57.8
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.1e-104 384.4 357 59.4
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 3.3e-104 382.9 355 57.7
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.6e-103 380.6 376 55.6
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 2.1e-103 380.2 356 56.7
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.8e-103 379.8 382 55.8
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 3.6e-103 379.4 345 58.0
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 6.1e-103 378.6 349 56.2
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.2e-100 370.2 409 52.8
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 3.7e-100 369.4 398 51.5
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 1.6e-98 364.0 369 55.0
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.6e-98 364.0 503 45.3
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 3.5e-98 362.8 386 52.6
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 5.9e-98 362.1 371 53.4
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.0e-97 361.3 410 51.2
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.7e-97 360.5 364 54.9
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.6e-97 358.6 356 56.5
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 1.2e-95 354.4 533 42.0
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 4.7e-95 352.4 378 52.6
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.4e-94 350.9 396 50.8
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.5e-93 347.4 346 55.5
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 3.4e-93 346.3 382 53.1
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 3.4e-93 346.3 334 56.3
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 4.6e-90 335.9 347 53.6
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 2.8e-87 326.6 281 62.6
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 4.4e-85 319.3 286 61.2
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.7e-84 316.2 237 70.0
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.4e-83 312.4 257 59.9
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.6e-82 309.3 355 51.8
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 5.1e-81 305.8 245 62.4
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.8e-79 300.1 313 52.4
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 2.0e-77 293.9 237 65.4
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 1.4e-75 287.7 347 49.0
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.2e-75 286.6 366 46.4
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 3.3e-72 276.6 346 44.8
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.6e-71 274.2 188 70.7
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 3.6e-71 273.1 255 57.3
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 4.7e-71 272.7 391 40.9
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 2.3e-65 253.8 343 42.6
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 6.2e-63 245.7 278 50.0
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 7.1e-59 232.3 545 32.5
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.0e-57 228.4 373 38.3
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.9e-57 226.5 336 43.5
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 3.6e-55 219.9 189 60.3
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 4.5e-45 186.4 325 36.9
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 2.5e-43 180.6 258 41.9
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 6.0e-42 176.0 192 46.9
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.0e-37 161.0 190 48.9
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 3.9e-33 146.7 115 65.2
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 4.1e-30 136.7 407 29.2
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 5.9e-29 132.9 332 29.8
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 8.5e-28 129.0 322 27.3
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.2e-26 125.2 108 59.3
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 1.9e-19 101.3 81 61.7
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.7e-18 97.4 103 47.6
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.8e-17 94.7 55 78.2
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 8.0e-10 69.3 117 39.3
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.4e-09 68.6 69 55.1
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.3e-07 62.0 29 89.7
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 6.3e-07 59.7 48 50.0
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.0e-06 56.2 31 74.2


User provided reference genes

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