Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050278 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D028421 5.1e-35 150.6 80 100.0
CSS0023043 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D004807 1.2e-15 86.3 53 88.7
Dinv15128 Davidia involucrata HOM05D000747 ORTHO05D004807 1.2e-15 86.3 53 88.7
Actinidia18481 Actinidia chinensis HOM05D000747 ORTHO05D004807 2.6e-15 85.1 53 86.8
Actinidia31572 Actinidia chinensis HOM05D000747 ORTHO05D004807 2.6e-15 85.1 53 86.8
Peaxi162Scf00126g01514 Petunia axillaris HOM05D000747 ORTHO05D004807 4.5e-15 84.3 53 86.8
Prupe.1G111600 Prunus persica HOM05D000747 ORTHO05D004807 4.5e-15 84.3 53 84.9
GSVIVG01034942001 Vitis vinifera HOM05D000747 ORTHO05D004807 5.9e-15 84.0 53 84.9
MD13G1148100 Malus domestica HOM05D000747 ORTHO05D004807 7.7e-15 83.6 53 83.0
Solyc01g057900.3 Solanum lycopersicum HOM05D000747 ORTHO05D004807 7.7e-15 83.6 53 84.9
Sopen01g023220 Solanum pennellii HOM05D000747 ORTHO05D004807 7.7e-15 83.6 53 84.9
Gohir.A09G241400 Gossypium hirsutum HOM05D000747 ORTHO05D004807 1.7e-14 82.4 53 83.0
Gohir.D09G242100 Gossypium hirsutum HOM05D000747 ORTHO05D004807 1.7e-14 82.4 53 83.0
Gorai.006G265700 Gossypium raimondii HOM05D000747 ORTHO05D004807 1.7e-14 82.4 53 83.0
Oeu052157.1 Olea europaea HOM05D000747 ORTHO05D004807 1.7e-14 82.4 53 84.9
QL06p013303 Quercus lobata HOM05D000747 ORTHO05D004807 1.7e-14 82.4 53 83.0
Thecc.04G307300 Theobroma cacao HOM05D000747 ORTHO05D004807 1.7e-14 82.4 53 83.0
TWI53G1735 Tripterygium wilfordii HOM05D000747 ORTHO05D004807 1.7e-14 82.4 53 83.0
Hma1.2p1_1096F.1_g256630 Hydrangea macrophylla HOM05D000747 ORTHO05D004807 2.2e-14 82.0 53 83.0
TAR633G1529 Trochodendron aralioides HOM05D000747 ORTHO05D004807 2.2e-14 82.0 53 83.0
Duzib212G0904 Durio zibethinus HOM05D000747 ORTHO05D004807 2.9e-14 81.6 53 81.1
Haze_00834 Corylus avellana HOM05D000747 ORTHO05D004807 3.8e-14 81.3 53 83.0
Migut.G00024 Erythranthe guttata HOM05D000747 ORTHO05D004807 3.8e-14 81.3 53 81.1
FvH4_4g20760 Fragaria vesca HOM05D000747 ORTHO05D004807 3.8e-14 81.3 53 83.0
FAN07G0175 Fragaria x ananassa HOM05D000747 ORTHO05D004807 3.8e-14 81.3 53 83.0
FAN17G1353 Fragaria x ananassa HOM05D000747 ORTHO05D004807 3.8e-14 81.3 53 83.0
MD16G1148200 Malus domestica HOM05D000747 ORTHO05D004807 3.8e-14 81.3 53 81.1
Manes.03G208600 Manihot esculenta HOM05D000747 ORTHO05D004807 3.8e-14 81.3 53 81.1
RcHm_v2.0_Chr4g0426201 Rosa chinensis HOM05D000747 ORTHO05D004807 3.8e-14 81.3 53 83.0
arahy.Tifrunner.gnm1.ann1.CPQB8S Arachis hypogaea HOM05D000747 ORTHO05D004807 5.0e-14 80.9 53 83.0
arahy.Tifrunner.gnm1.ann1.NSV5VW Arachis hypogaea HOM05D000747 ORTHO05D004807 5.0e-14 80.9 53 83.0
MSTRG.10174 Avicennia marina HOM05D000747 ORTHO05D004807 5.0e-14 80.9 53 79.2
Glyma.15G137000 Glycine max HOM05D000747 ORTHO05D004807 5.0e-14 80.9 53 81.1
Phvul.006G120900 Phaseolus vulgaris HOM05D000747 ORTHO05D004807 5.0e-14 80.9 53 81.1
CAN.G170.17 Capsicum annuum HOM05D000747 ORTHO05D004807 6.5e-14 80.5 53 83.0
CAN.G3221.1 Capsicum annuum HOM05D000747 ORTHO05D004807 6.5e-14 80.5 53 83.0
CiPaw.01G133500 Carya illinoinensis HOM05D000747 ORTHO05D004807 1.1e-13 79.7 53 83.0
SGA_v2.0_scaffold157G37358 Striga asiatica HOM05D000747 ORTHO05D004807 1.1e-13 79.7 53 79.2
TAR362G0993 Trochodendron aralioides HOM05D000747 ORTHO05D004807 1.5e-13 79.3 53 79.2
Lj6g0013861 Lotus japonicus HOM05D000747 ORTHO05D004807 1.9e-13 79.0 53 79.2
Potri.010G150000 Populus trichocarpa HOM05D000747 ORTHO05D004807 1.9e-13 79.0 53 77.4
Ah.07g203890 Amaranthus hybridus HOM05D000747 ORTHO05D004807 4.2e-13 77.8 53 81.1
Medtr2g033040 Medicago truncatula HOM05D000747 ORTHO05D004807 4.2e-13 77.8 60 71.7
Nn3g21805 Nelumbo nucifera HOM05D000747 ORTHO05D004807 4.2e-13 77.8 53 83.0
SalBow8G1635 Salvia bowleyana HOM05D000747 ORTHO05D004807 4.2e-13 77.8 53 79.2
Glyma.07G235800 Glycine max HOM05D000747 ORTHO05D004807 5.5e-13 77.4 53 77.4
Potri.008G101300 Populus trichocarpa HOM05D000747 ORTHO05D004807 5.5e-13 77.4 53 75.5
Rhsim04G0243000 Rhododendron simsii HOM05D000747 ORTHO05D004807 5.5e-13 77.4 53 79.2
VMungo1215G1053 Vigna mungo HOM05D000747 ORTHO05D004807 5.5e-13 77.4 53 77.4
Gohir.D10G182300 Gossypium hirsutum HOM05D000747 ORTHO05D004807 7.2e-13 77.0 53 77.4
Gorai.011G204200 Gossypium raimondii HOM05D000747 ORTHO05D004807 7.2e-13 77.0 53 77.4
Psat1g162680 Pisum sativum HOM05D000747 ORTHO05D004807 7.2e-13 77.0 53 77.4
Ca_00947_v3 Cicer arietinum L. HOM05D000747 ORTHO05D004807 9.4e-13 76.6 60 70.0
ClCG06G004370 Citrullus lanatus HOM05D000747 ORTHO05D004807 9.4e-13 76.6 53 81.1
MELO3C021252.2 Cucumis melo HOM05D000747 ORTHO05D004807 9.4e-13 76.6 53 81.1
Sabra08G0076600 Salix brachista HOM05D000747 ORTHO05D004807 9.4e-13 76.6 53 75.5
TPR.G10108 Trifolium pratense HOM05D000747 ORTHO05D004807 9.4e-13 76.6 60 70.0
Atru.chr4.3105 Acer truncatum HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 77.4
arahy.Tifrunner.gnm1.ann1.R130QB Arachis hypogaea HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 77.4
arahy.Tifrunner.gnm1.ann1.YUC3W2 Arachis hypogaea HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 77.4
Ciclev10004231m.g Citrus clementina HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 79.2
MBI18_g27389_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 81.1
Phvul.003G118500 Phaseolus vulgaris HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 75.5
Sed0003045 Sechium edule HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 81.1
Hund12236 Selenicereus undatus HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 81.1
Sc25g0001570 Simmondsia chinensis HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 81.1
vmacro07974 Vaccinium macrocarpon HOM05D000747 ORTHO05D004807 1.2e-12 76.3 53 81.1
Gohir.A10G175700 Gossypium hirsutum HOM05D000747 ORTHO05D004807 1.6e-12 75.9 53 75.5
Cpa.g.sc146.73 Carica papaya HOM05D000747 ORTHO05D004807 2.1e-12 75.5 53 79.2
Sabra10G0115600 Salix brachista HOM05D000747 ORTHO05D004807 2.1e-12 75.5 53 73.6
Glyma.17G037600 Glycine max HOM05D000747 ORTHO05D004807 2.7e-12 75.1 53 75.5
CANSAT78G0170 Cannabis sativa HOM05D000747 ORTHO05D004807 3.6e-12 74.7 53 75.5
AUR62002590 Chenopodium quinoa HOM05D000747 ORTHO05D004807 3.6e-12 74.7 53 77.4
Cc03_g00480 Coffea canephora HOM05D000747 ORTHO05D004807 4.7e-12 74.3 53 77.4
Sed0005984 Sechium edule HOM05D000747 ORTHO05D004807 4.7e-12 74.3 53 77.4
Lalb_Chr15g0089041 Lupinus albus HOM05D000747 ORTHO05D004807 6.1e-12 73.9 53 77.4
DCAR_002525 Daucus carota HOM05D000747 ORTHO05D004807 8.0e-12 73.6 56 75.0
EL10Ac3g06290 Beta vulgaris HOM05D000747 ORTHO05D004807 1.0e-11 73.2 53 77.4
Gohir.A12G078600 Gossypium hirsutum HOM05D000747 ORTHO05D028421 1.0e-11 73.2 53 75.5
HanXRQChr06g0182841 Helianthus annuus HOM05D000747 ORTHO05D004807 1.0e-11 73.2 53 71.7
unitig_88.g27698 Utricularia gibba HOM05D000747 ORTHO05D028421 1.4e-11 72.8 53 75.5
Duzib151G0433 Durio zibethinus HOM05D000747 ORTHO05D004807 1.8e-11 72.4 53 75.5
PGR031G1986 Punica granatum HOM05D000747 ORTHO05D004807 1.8e-11 72.4 53 75.5
ECA233G3437 Erigeron canadensis HOM05D000747 ORTHO05D004807 5.2e-11 70.9 53 71.7
Eucgr.B03986 Eucalyptus grandis HOM05D000747 ORTHO05D004807 5.2e-11 70.9 53 73.6
Aa31LG8G4180 Aethionema arabicum HOM05D000747 ORTHO05D004807 8.8e-11 70.1 53 73.6
Sp3g15400 Schrenkiella parvula HOM05D000747 ORTHO05D004807 1.1e-10 69.7 53 71.7
AL3G30230 Arabidopsis lyrata HOM05D000747 ORTHO05D004807 1.5e-10 69.3 53 71.7
AT3G17205 Arabidopsis thaliana HOM05D000747 ORTHO05D004807 1.5e-10 69.3 53 71.7
Carub.0003s1696 Capsella rubella HOM05D000747 ORTHO05D004807 1.5e-10 69.3 53 71.7
Thhalv10019984m.g Eutrema salsugineum HOM05D000747 ORTHO05D004807 2.6e-10 68.6 53 69.8
THA.LOC104820321 Tarenaya hassleriana HOM05D000747 ORTHO05D004807 2.6e-10 68.6 53 71.7
BcaC05g28820 Brassica carinata HOM05D000747 ORTHO05D004807 3.3e-10 68.2 53 69.8
C05p49250 Brassica napus HOM05D000747 ORTHO05D004807 3.3e-10 68.2 53 69.8
BolC5t33666H Brassica oleracea HOM05D000747 ORTHO05D004807 3.3e-10 68.2 53 69.8
AUR62030014 Chenopodium quinoa HOM05D000747 ORTHO05D004807 3.3e-10 68.2 49 77.6
SHI00093 Sapria himalayana HOM05D000747 ORTHO05D028421 3.3e-10 68.2 53 71.7
ATR0693G276 Amborella trichopoda HOM05D000747 ORTHO05D004807 4.4e-10 67.8 53 71.7
CARHR092470 Cardamine hirsuta HOM05D000747 ORTHO05D004807 4.4e-10 67.8 53 69.8
A05p32580 Brassica napus HOM05D000747 ORTHO05D004807 5.7e-10 67.4 53 69.8
BraA05t22082Z Brassica rapa HOM05D000747 ORTHO05D004807 5.7e-10 67.4 53 69.8
Lsat_1_v5_gn_6_70541 Lactuca sativa HOM05D000747 ORTHO05D004807 7.5e-10 67.0 53 69.8
CDE11G0596 Ceratophyllum demersum HOM05D000747 ORTHO05D004807 1.7e-09 65.9 53 67.9
BcaB04g20855 Brassica carinata HOM05D000747 ORTHO05D004807 2.2e-09 65.5 53 67.9
BcaB06g25812 Brassica carinata HOM05D000747 ORTHO05D004807 2.2e-09 65.5 53 67.9
CDE05G1257 Ceratophyllum demersum HOM05D000747 ORTHO05D004807 3.7e-09 64.7 60 60.0
BcaC09g48678 Brassica carinata HOM05D000747 ORTHO05D004807 8.2e-09 63.5 53 66.0
C01p47020 Brassica napus HOM05D000747 ORTHO05D004807 8.2e-09 63.5 53 66.0
BolC1t04670H Brassica oleracea HOM05D000747 ORTHO05D004807 8.2e-09 63.5 53 66.0
A01p37100 Brassica napus HOM05D000747 ORTHO05D004807 1.1e-08 63.2 53 66.0
Os05g0159000 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D004807 1.4e-08 62.8 53 69.8
Lj3A836G20 Lonicera japonica HOM05D000747 ORTHO05D004807 1.8e-08 62.4 53 66.0
BraA01t03772Z Brassica rapa HOM05D000747 ORTHO05D004807 2.4e-08 62.0 53 64.2
PSO210G6954 Papaver somniferum HOM05D000747 ORTHO05D004807 5.3e-08 60.8 53 66.0
PSO761G0701 Papaver somniferum HOM05D000747 ORTHO05D004807 5.3e-08 60.8 53 66.0
HPP92_015995 Vanilla planifolia HOM05D000747 ORTHO05D004807 5.3e-08 60.8 53 66.0


User provided reference genes

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