Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.2e-272 941.8 525 100.0
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 6.1e-262 907.1 527 94.3
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 7.7e-156 554.7 542 60.0
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 2.9e-142 509.6 540 56.3
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 3.0e-131 473.0 473 56.2
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 3.9e-131 472.6 536 52.4
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 1.2e-127 461.1 489 56.0
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.3e-126 457.6 450 58.9
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.7e-126 456.1 534 51.9
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 3.0e-123 446.4 461 54.0
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.5e-122 444.1 479 53.9
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 4.7e-121 439.1 349 65.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 1.4e-120 437.6 370 61.4
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 2.0e-119 433.7 490 51.4
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 1.1e-117 427.9 350 64.3
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.4e-117 427.6 465 54.4
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.9e-117 427.2 470 52.3
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 5.4e-117 425.6 350 64.0
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 7.1e-117 425.2 348 63.2
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 1.2e-116 424.5 394 59.4
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.2e-116 424.5 350 64.0
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 2.1e-116 423.7 373 59.8
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 6.0e-116 422.2 356 62.6
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 7.8e-116 421.8 496 50.0
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.0e-115 421.4 481 51.4
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 1.7e-115 420.6 465 51.4
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 1.5e-114 417.5 470 51.3
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 3.3e-114 416.4 464 52.2
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 4.3e-114 416.0 359 59.6
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 5.6e-114 415.6 467 54.0
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 5.6e-114 415.6 447 52.3
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 9.6e-114 414.8 466 51.7
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 1.2e-113 414.5 489 51.5
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 1.6e-113 414.1 366 59.6
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 2.8e-113 413.3 470 53.2
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 3.6e-113 412.9 354 62.4
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 6.2e-113 412.1 438 53.0
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 8.1e-113 411.8 328 67.1
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 1.4e-112 411.0 469 50.1
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.8e-112 410.6 468 52.6
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 2.4e-112 410.2 476 51.3
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 3.1e-112 409.8 306 65.7
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.1e-112 409.8 614 41.9
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 5.2e-112 409.1 614 41.9
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 8.9e-112 408.3 330 62.4
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 8.9e-112 408.3 460 51.3
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.5e-111 407.5 369 57.2
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 2.6e-111 406.8 451 51.2
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 3.4e-111 406.4 460 51.7
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 5.8e-111 405.6 329 63.2
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 9.9e-111 404.8 465 50.3
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 1.3e-110 404.4 464 50.2
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 2.2e-110 403.7 310 63.9
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 2.2e-110 403.7 357 60.8
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 3.8e-110 402.9 366 55.5
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 1.1e-109 401.4 333 62.5
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 5.4e-109 399.1 365 57.5
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 2.7e-108 396.7 466 50.6
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 1.0e-107 394.8 471 52.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.3e-107 394.4 399 53.6
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 1.3e-107 394.4 358 58.4
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.3e-107 394.4 480 50.8
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.3e-107 393.7 356 59.8
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 3.9e-107 392.9 454 51.8
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 5.6e-106 389.0 402 54.7
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.6e-106 389.0 399 54.9
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.8e-105 386.7 470 50.0
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 4.8e-105 386.0 364 55.2
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 1.4e-104 384.4 399 55.9
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.8e-104 384.0 354 58.5
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 2.0e-103 380.6 402 54.2
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.6e-103 380.2 856 36.1
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 4.5e-103 379.4 397 53.4
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 6.4e-102 375.6 464 51.1
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 2.4e-101 373.6 474 49.8
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.2e-100 371.3 411 50.9
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 1.6e-100 370.9 447 49.4
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.3e-99 367.1 465 47.1
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 9.6e-98 361.7 413 53.5
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.6e-97 360.9 434 47.5
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.6e-97 360.9 376 52.1
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.8e-97 360.1 333 55.3
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 4.8e-97 359.4 285 64.2
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.8e-96 357.5 356 53.4
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 5.3e-96 355.9 354 52.8
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.2e-95 354.8 290 61.0
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.5e-95 354.4 943 33.3
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 9.9e-95 351.7 353 51.6
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.8e-94 349.7 360 54.4
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 6.4e-94 349.0 347 52.7
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.4e-93 347.8 373 50.7
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 1.3e-91 341.3 497 44.1
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 6.2e-89 332.4 416 46.4
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 2.9e-86 323.6 328 53.0
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.9e-82 310.8 468 41.9
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 6.9e-72 275.8 349 47.9
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 9.7e-66 255.4 350 44.0
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 1.8e-64 251.1 299 49.5
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 4.1e-64 250.0 350 42.0
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.6e-63 247.3 287 48.1
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 6.7e-59 232.6 300 42.3
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 7.0e-56 222.6 302 44.4
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 5.0e-54 216.5 328 38.1
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 3.2e-53 213.8 171 64.3
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.8e-48 198.0 199 50.8
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.1e-48 196.8 282 43.6
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 2.1e-44 184.5 239 45.2
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 6.1e-44 183.0 166 56.0
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 5.4e-40 169.9 134 64.9
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 7.2e-37 159.5 147 61.9
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 3.0e-35 154.1 123 59.3
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 6.8e-35 152.9 402 31.8
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.5e-34 151.8 274 38.3
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 3.1e-32 144.1 119 63.0
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 7.0e-32 142.9 231 35.5
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 1.6e-31 141.7 149 50.3
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.5e-29 135.2 125 56.0
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 6.8e-27 126.3 238 34.9
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.4e-26 123.6 128 56.2
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.4e-26 123.6 128 56.2
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.0e-22 112.5 88 59.1
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.5e-21 107.8 62 80.6
Actinidia19446 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.8e-19 101.7 243 38.3
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.7e-15 87.8 52 76.9
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.0e-14 85.9 64 59.4
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 2.1e-12 78.2 72 58.3
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 6.2e-12 76.6 110 34.5
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.1e-11 75.9 115 39.1
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 9.9e-10 69.3 50 60.0
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 1.7e-09 68.6 46 67.4
COL.COLO4_26597 Corchorus olitorius HOM05D000001 ORTHO05D010004 3.2e-08 64.3 72 47.2
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 1.2e-07 62.4 149 29.5
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 6.6e-06 56.6 196 27.6


User provided reference genes

Program Settings