Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.1e-44 181.0 92 100.0
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 4.7e-32 141.0 92 78.3
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.1e-28 129.8 92 69.6
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 2.4e-28 128.6 90 70.0
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 2.0e-27 125.6 90 68.9
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.0e-26 123.2 92 65.2
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 5.0e-26 120.9 91 69.2
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 6.5e-26 120.6 92 68.5
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 8.5e-26 120.2 90 65.6
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 8.5e-26 120.2 91 70.3
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.5e-25 119.4 90 67.8
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.9e-25 119.0 91 68.1
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 4.2e-25 117.9 91 69.2
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 5.5e-25 117.5 91 67.0
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 5.5e-25 117.5 91 67.0
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 7.2e-25 117.1 90 66.7
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 7.2e-25 117.1 92 70.7
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.2e-24 116.3 91 67.0
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 8.0e-24 113.6 89 66.3
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 1.0e-23 113.2 91 67.0
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 1.8e-23 112.5 90 63.3
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 1.8e-23 112.5 86 64.0
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 3.0e-23 111.7 90 63.3
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.0e-23 111.3 91 62.6
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 5.2e-23 110.9 91 63.7
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 8.8e-23 110.2 91 63.7
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 2.0e-22 109.0 91 61.5
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 3.4e-22 108.2 91 60.4
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 3.4e-22 108.2 90 62.2
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 7.5e-22 107.1 87 63.2
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 9.8e-22 106.7 90 64.4
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 2.8e-21 105.1 86 60.5
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 8.3e-21 103.6 90 57.8
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 1.1e-20 103.2 98 58.2
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 1.4e-20 102.8 98 58.2
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 5.4e-20 100.9 98 56.1
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 1.6e-19 99.4 91 63.7
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 2.0e-19 99.0 88 55.7
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 4.5e-19 97.8 88 55.7
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 6.5e-18 94.0 88 53.4
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 6.5e-18 94.0 88 53.4
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 1.9e-17 92.4 82 56.1
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 3.2e-17 91.7 88 52.3
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 5.5e-17 90.9 86 54.7
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 5.5e-17 90.9 100 54.0
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 7.2e-17 90.5 90 52.2
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.6e-16 89.4 91 52.7
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 2.1e-16 89.0 87 57.5
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 2.8e-16 88.6 107 49.5
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 8.0e-16 87.0 93 48.4
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 3.0e-15 85.1 86 53.5
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 3.0e-15 85.1 90 51.1
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.2e-15 84.3 86 53.5
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 5.2e-15 84.3 88 51.1
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 6.8e-15 84.0 90 51.1
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.5e-14 82.8 90 47.8
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 2.6e-14 82.0 88 50.0
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.3e-13 79.7 89 47.2
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 3.7e-13 78.2 99 43.4
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 4.9e-13 77.8 86 47.7
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 4.9e-13 77.8 90 47.8
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 1.8e-12 75.9 44 81.8
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 3.1e-12 75.1 90 48.9
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 5.4e-12 74.3 90 44.4
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 7.0e-12 73.9 90 43.3
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.2e-11 73.2 98 43.9
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.6e-11 72.8 96 41.7
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 4.5e-11 71.2 72 50.0
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 5.9e-11 70.9 90 43.3
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 5.9e-11 70.9 97 40.2
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.3e-10 68.9 92 44.6
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.3e-10 68.9 92 44.6
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.3e-10 68.9 97 40.2
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 2.9e-10 68.6 53 66.0
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 6.6e-10 67.4 92 41.3
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 8.6e-10 67.0 92 43.5
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 1.5e-09 66.2 92 43.5
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 2.5e-09 65.5 69 53.6
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 1.2e-08 63.2 96 37.5
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.6e-08 62.8 40 75.0
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 1.6e-08 62.8 92 41.3
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 2.1e-08 62.4 88 40.9
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 4.7e-08 61.2 91 39.6
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.0e-08 60.5 78 44.9
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 4.0e-07 58.2 67 46.3


User provided reference genes

Program Settings