Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 5.4e-139 497.7 255 100.0
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 5.9e-85 318.2 204 81.9
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 5.9e-85 318.2 204 81.9
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 3.6e-82 308.9 216 75.5
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 1.4e-81 307.0 213 77.0
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 8.8e-81 304.3 213 77.0
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 2.0e-77 293.1 205 75.1
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 1.3e-76 290.4 255 66.3
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 1.7e-76 290.0 213 71.4
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 1.7e-76 290.0 186 80.6
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 3.8e-76 288.9 210 72.9
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 3.8e-76 288.9 208 74.5
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 5.0e-76 288.5 218 69.7
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 8.6e-76 287.7 210 72.9
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 8.6e-76 287.7 205 73.2
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 1.1e-75 287.3 210 73.3
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 1.1e-75 287.3 211 71.6
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 1.9e-75 286.6 205 71.7
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 1.9e-75 286.6 208 71.2
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 4.2e-75 285.4 210 71.0
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 1.2e-74 283.9 215 69.8
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 6.1e-74 281.6 206 71.8
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 6.1e-74 281.6 211 71.1
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 8.0e-74 281.2 210 71.0
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.0e-73 280.8 218 67.9
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.0e-73 280.8 203 73.9
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 2.3e-73 279.6 210 71.0
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 1.2e-72 277.3 206 72.3
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 1.2e-72 277.3 207 71.0
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 2.0e-72 276.6 186 76.3
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 2.0e-72 276.6 209 70.8
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 2.6e-72 276.2 210 70.5
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 3.4e-72 275.8 205 71.7
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 3.4e-72 275.8 207 71.0
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 4.4e-72 275.4 194 74.2
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 5.7e-72 275.0 218 67.0
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 9.8e-72 274.2 207 71.5
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.7e-71 273.5 203 72.4
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 1.7e-71 273.5 209 70.3
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 2.2e-71 273.1 205 71.2
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 2.2e-71 273.1 210 69.5
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 2.2e-71 273.1 194 73.2
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 2.8e-71 272.7 211 67.8
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 2.8e-71 272.7 211 69.2
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 3.7e-71 272.3 205 70.7
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 4.9e-71 271.9 209 68.9
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 6.3e-71 271.6 207 70.0
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 1.1e-70 270.8 200 69.5
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 2.4e-70 269.6 208 69.7
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 3.2e-70 269.2 214 66.8
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 3.2e-70 269.2 177 77.4
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 4.1e-70 268.9 212 66.0
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 4.1e-70 268.9 213 66.2
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 2.0e-69 266.5 186 74.2
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 2.7e-69 266.2 219 63.9
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 2.7e-69 266.2 216 64.4
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 3.5e-69 265.8 208 66.3
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 3.5e-69 265.8 191 72.3
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 5.9e-69 265.0 194 69.1
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 7.8e-69 264.6 210 65.7
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 1.3e-68 263.8 213 64.3
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.3e-68 263.8 212 66.5
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 3.9e-68 262.3 212 65.6
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.0e-68 261.9 212 66.0
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 6.6e-68 261.5 212 66.0
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.5e-67 260.4 186 71.5
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.5e-67 260.4 212 65.6
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 1.9e-67 260.0 213 63.4
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 1.9e-67 260.0 205 67.8
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 1.9e-67 260.0 204 68.1
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 2.5e-67 259.6 186 71.0
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 4.3e-67 258.8 210 63.8
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 5.6e-67 258.5 213 65.7
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 7.3e-67 258.1 206 67.5
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 7.3e-67 258.1 208 63.9
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 9.5e-67 257.7 208 64.9
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 1.2e-66 257.3 186 69.9
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.2e-66 257.3 212 66.0
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 3.6e-66 255.8 210 65.7
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 6.1e-66 255.0 186 69.4
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 6.1e-66 255.0 203 68.0
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 1.0e-65 254.2 223 62.8
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 1.4e-65 253.8 203 64.5
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 1.4e-65 253.8 230 60.0
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 3.1e-65 252.7 205 63.9
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 5.2e-65 251.9 179 71.5
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 6.8e-65 251.5 196 67.9
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 6.8e-65 251.5 223 60.5
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 8.9e-65 251.1 233 59.7
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 8.9e-65 251.1 214 64.5
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 1.5e-64 250.4 208 64.4
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 4.9e-63 245.4 244 55.3
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 1.1e-62 244.2 213 62.0
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 5.4e-62 241.9 181 71.3
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 5.4e-62 241.9 211 61.1
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 2.7e-61 239.6 209 66.0
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 4.6e-61 238.8 210 61.0
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 1.3e-60 237.3 189 63.0
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 1.5e-59 233.8 206 65.5
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 1.6e-58 230.3 203 60.6
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 1.4e-54 217.2 242 51.2
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 2.1e-53 213.4 185 60.5
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.6e-50 203.8 152 69.7
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 1.4e-46 190.7 138 71.7
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.9e-46 190.3 176 63.1
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 1.0e-44 184.5 193 53.4
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 1.0e-44 184.5 180 56.7
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 4.7e-42 175.6 193 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 1.3e-39 167.5 214 45.3
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 2.4e-38 163.3 187 44.4
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 1.3e-36 157.5 123 64.2
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 2.2e-31 140.2 158 51.3
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 2.4e-30 136.7 118 65.3
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.1e-29 133.7 161 50.9
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 2.3e-28 130.2 89 76.4
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 8.1e-26 121.7 90 75.6
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 8.1e-26 121.7 177 46.3
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 1.4e-25 120.9 114 58.8
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.9e-25 118.6 94 64.9
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 7.1e-22 108.6 198 36.4
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 9.3e-22 108.2 209 34.0
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 1.1e-19 101.3 70 68.6
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 5.6e-19 99.0 69 68.1
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 2.1e-18 97.1 85 58.8
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 8.1e-18 95.1 71 69.0
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 1.0e-12 78.2 221 31.2
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 3.7e-10 69.7 67 64.2
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 3.4e-08 63.2 92 41.3


User provided reference genes

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