Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.8e-228 793.9 400 100.0
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.6e-223 777.3 405 97.8
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 5.6e-199 697.6 396 87.1
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 4.9e-195 684.5 424 81.1
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 7.1e-194 680.6 400 83.2
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.1e-192 674.5 400 81.2
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 2.5e-191 672.2 401 82.3
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.3e-191 671.8 401 82.5
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.6e-190 669.5 400 82.2
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 2.1e-190 669.1 401 82.8
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 4.8e-190 667.9 400 82.8
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 8.1e-190 667.2 398 82.9
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.4e-189 666.4 400 81.8
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.4e-189 666.4 400 81.0
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 1.2e-188 663.3 401 82.0
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 2.6e-188 662.1 401 81.8
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.6e-188 662.1 401 81.0
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 5.8e-188 661.0 400 80.5
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.7e-187 659.4 401 81.5
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 1.7e-187 659.4 400 81.5
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 2.9e-187 658.7 400 81.8
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 4.9e-187 657.9 400 82.0
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 8.4e-187 657.1 400 80.8
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 3.2e-186 655.2 400 80.5
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 5.5e-186 654.4 401 79.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 7.1e-186 654.1 419 77.8
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 3.5e-185 651.7 400 79.5
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 4.6e-185 651.4 401 80.3
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 6.0e-185 651.0 402 79.6
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.3e-184 649.8 400 79.5
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.8e-184 649.4 400 79.8
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 2.3e-184 649.0 395 80.8
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 3.0e-184 648.7 400 80.8
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 3.9e-184 648.3 400 80.8
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 8.7e-184 647.1 392 82.1
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.1e-183 646.7 400 80.0
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.5e-183 646.4 401 81.0
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.9e-183 646.0 397 78.3
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.9e-183 646.0 397 78.3
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 5.7e-183 644.4 400 79.8
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.4e-183 644.0 393 80.9
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 9.6e-183 643.7 400 78.8
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.6e-182 642.9 400 78.8
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 4.8e-182 641.3 400 79.8
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 6.2e-182 641.0 399 79.9
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 6.2e-182 641.0 400 78.2
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 8.2e-182 640.6 401 78.8
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 3.1e-181 638.6 400 77.8
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 5.3e-181 637.9 400 77.8
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 6.9e-181 637.5 402 79.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.5e-180 636.3 396 79.0
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 2.0e-180 636.0 397 78.6
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 2.6e-180 635.6 400 77.5
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 5.8e-180 634.4 401 78.8
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 7.6e-180 634.0 401 76.6
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 7.6e-180 634.0 400 77.8
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 7.6e-180 634.0 401 79.1
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 2.9e-179 632.1 401 78.6
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 5.0e-179 631.3 400 76.8
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 5.0e-179 631.3 407 78.1
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 1.9e-178 629.4 401 78.3
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 5.5e-178 627.9 398 76.9
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 7.1e-178 627.5 432 73.6
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 7.1e-178 627.5 553 62.7
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 2.1e-177 625.9 398 79.1
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.3e-176 623.2 388 79.6
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 6.7e-176 620.9 395 79.5
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.5e-175 619.8 403 75.7
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 2.5e-175 619.0 403 75.7
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 5.7e-175 617.8 400 75.2
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 9.7e-175 617.1 403 76.4
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.3e-174 616.7 452 73.0
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.3e-174 616.7 402 77.1
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 6.3e-174 614.4 402 76.9
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 8.2e-174 614.0 419 73.7
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.4e-173 613.2 398 76.1
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 6.9e-173 610.9 400 75.0
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 6.5e-171 604.4 401 74.6
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 8.5e-171 604.0 403 73.7
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 8.5e-171 604.0 403 73.7
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.1e-170 603.6 403 73.7
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 2.5e-170 602.4 496 63.7
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 5.5e-170 601.3 394 77.4
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 7.2e-170 600.9 401 74.1
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 9.4e-170 600.5 405 75.3
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.6e-169 599.7 402 74.1
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 2.7e-169 599.0 401 74.3
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 6.1e-169 597.8 401 74.1
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.4e-168 596.7 401 73.6
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 1.4e-168 596.7 403 73.0
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 1.8e-168 596.3 401 73.6
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 1.8e-168 596.3 401 73.6
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 2.3e-168 595.9 400 73.5
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 3.0e-168 595.5 380 76.8
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.1e-167 593.6 380 76.6
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 1.1e-167 593.6 401 73.1
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 2.5e-167 592.4 401 73.6
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.3e-167 592.0 401 73.1
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 5.7e-167 591.3 400 73.0
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.3e-166 590.1 379 76.0
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-166 590.1 400 73.0
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.8e-166 588.2 442 68.8
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 4.8e-166 588.2 444 68.7
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 9.1e-165 583.9 366 79.5
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 1.2e-164 583.6 379 75.2
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 3.4e-164 582.0 391 73.9
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 5.0e-163 578.2 417 70.3
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 5.0e-163 578.2 395 71.1
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.4e-162 576.6 362 78.5
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 6.1e-161 571.2 351 81.2
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 2.2e-158 562.8 401 70.8
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.8e-158 562.4 395 69.9
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 5.0e-147 525.0 327 79.8
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 6.1e-145 518.1 292 87.3
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.3e-139 500.4 316 81.0
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.5e-138 496.9 311 77.8
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 4.4e-135 485.3 306 78.8
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 3.4e-127 459.1 343 71.4
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 7.0e-117 424.9 335 60.9
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 6.6e-115 418.3 361 54.8
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 1.1e-112 411.0 260 78.5
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 9.8e-111 404.4 342 57.3
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 2.2e-110 403.3 340 55.3
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 6.6e-107 391.7 235 85.1
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 2.1e-100 370.2 357 52.7
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.0e-83 314.7 284 52.1
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 6.2e-81 305.4 226 69.0
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.9e-77 293.9 350 45.4
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 5.8e-71 272.3 358 41.6
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 4.2e-61 239.6 350 40.3
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 2.7e-60 236.9 233 57.9
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 7.9e-60 235.3 205 63.9
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 1.9e-58 230.7 268 51.1
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.1e-56 224.9 168 70.2
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.4e-43 181.4 99 89.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.8e-33 147.1 80 88.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.8e-33 146.4 82 87.8
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.9e-29 134.4 132 58.3
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.8e-27 127.9 81 77.8
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.1e-20 104.4 65 75.4
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 6.1e-20 102.8 105 50.5
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 5.7e-18 96.3 75 61.3
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 2.8e-12 77.4 53 73.6
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 9.8e-10 68.9 36 94.4
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 5.4e-08 63.2 41 78.0
Actinidia30121 Actinidia chinensis HOM05D000834 ORTHO05D056792 2.7e-07 60.8 40 67.5
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.7e-06 58.2 42 69.0
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 5.0e-06 56.6 260 22.7
arahy.Tifrunner.gnm1.ann1.1Z9DBD Arachis hypogaea HOM05D000380 ORTHO05D002061 6.6e-06 56.2 43 60.5


User provided reference genes

Program Settings