Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050121 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.9e-95 352.4 171 100.0
CSS0033523 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.5e-84 316.2 171 91.8
CSS0000799 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 9.5e-63 243.8 153 82.4
CSS0033849 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 2.1e-62 242.7 159 79.9
CSS0001180 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 2.8e-62 242.3 153 81.7
CSS0000537 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 4.7e-62 241.5 159 79.9
CSS0034079 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 2.3e-61 239.2 159 79.2
Actinidia01944 Actinidia chinensis HOM05D001685 ORTHO05D007488 1.4e-58 229.9 153 78.4
Lalb_Chr18g0055611 Lupinus albus HOM05D001685 ORTHO05D007488 1.9e-58 229.6 149 78.5
MBI19_g36823_MAGBIO Magnolia biondii HOM05D001685 ORTHO05D007488 3.2e-58 228.8 153 77.1
THA.LOC104802719 Tarenaya hassleriana HOM05D001685 ORTHO05D007488 9.2e-58 227.3 149 77.2
ATR0706G022 Amborella trichopoda HOM05D001685 ORTHO05D007488 1.6e-57 226.5 153 75.8
TAR636G1751 Trochodendron aralioides HOM05D001685 ORTHO05D007488 2.1e-57 226.1 153 76.5
Cpa.g.sc16.146 Carica papaya HOM05D001685 ORTHO05D007488 6.0e-57 224.6 149 75.2
vmacro08110 Vaccinium macrocarpon HOM05D001685 ORTHO05D007488 6.0e-57 224.6 157 72.6
TWI09G0695 Tripterygium wilfordii HOM05D001685 ORTHO05D007488 1.3e-56 223.4 149 75.8
CANSAT78G0268 Cannabis sativa HOM05D001685 ORTHO05D007488 1.7e-56 223.0 149 75.8
Rhsim04G0218700 Rhododendron simsii HOM05D001685 ORTHO05D007488 1.7e-56 223.0 157 72.0
Dinv44406 Davidia involucrata HOM05D001685 ORTHO05D007488 2.3e-56 222.6 153 75.8
Sc13g0003540 Simmondsia chinensis HOM05D001685 ORTHO05D007488 2.3e-56 222.6 153 73.9
arahy.Tifrunner.gnm1.ann1.536D4K Arachis hypogaea HOM05D001685 ORTHO05D007488 3.0e-56 222.2 149 75.2
arahy.Tifrunner.gnm1.ann1.ADAJ08 Arachis hypogaea HOM05D001685 ORTHO05D007488 3.0e-56 222.2 149 75.2
Nn3g21379 Nelumbo nucifera HOM05D001685 ORTHO05D007488 3.0e-56 222.2 153 75.2
Cc03_g02120 Coffea canephora HOM05D001685 ORTHO05D007488 3.9e-56 221.9 154 73.4
Ciclev10004482m.g Citrus clementina HOM05D001685 ORTHO05D007488 5.1e-56 221.5 149 75.8
Eucgr.H03869 Eucalyptus grandis HOM05D001685 ORTHO05D007488 5.1e-56 221.5 149 75.8
Aqoxy1G01559 Aquilegia oxysepala HOM05D001685 ORTHO05D007488 6.6e-56 221.1 153 75.2
Atru.chr4.2789 Acer truncatum HOM05D001685 ORTHO05D007488 8.6e-56 220.7 149 75.2
PGR004G0738 Punica granatum HOM05D001685 ORTHO05D007488 8.6e-56 220.7 149 74.5
SGA_v2.0_scaffold86G26925 Striga asiatica HOM05D001685 ORTHO05D007488 8.6e-56 220.7 149 74.5
CiPaw.01G151100 Carya illinoinensis HOM05D001685 ORTHO05D007488 1.1e-55 220.3 149 74.5
Hma1.2p1_0698F.1_g205400 Hydrangea macrophylla HOM05D001685 ORTHO05D007488 1.5e-55 219.9 153 73.2
Ah.04g153910 Amaranthus hybridus HOM05D001685 ORTHO05D007488 2.5e-55 219.2 153 73.9
Haze_01243 Corylus avellana HOM05D001685 ORTHO05D007488 2.5e-55 219.2 149 74.5
MD16G1172900 Malus domestica HOM05D001685 ORTHO05D007488 2.5e-55 219.2 149 73.8
Hund17597 Selenicereus undatus HOM05D001685 ORTHO05D007488 2.5e-55 219.2 153 73.2
AL6G29840 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 3.3e-55 218.8 161 70.2
CDE01G0502 Ceratophyllum demersum HOM05D001685 ORTHO05D007488 3.3e-55 218.8 150 74.7
C02p10030 Brassica napus HOM05D001685 ORTHO05D007488 4.3e-55 218.4 161 70.2
BolC2t06905H Brassica oleracea HOM05D001685 ORTHO05D007488 4.3e-55 218.4 161 70.2
BraA02t05459Z Brassica rapa HOM05D001685 ORTHO05D007488 4.3e-55 218.4 161 70.2
Carub.0006s1685 Capsella rubella HOM05D001685 ORTHO05D007488 4.3e-55 218.4 161 70.2
Cfa015363 Carpinus fangiana HOM05D001685 ORTHO05D007488 4.3e-55 218.4 149 74.5
BcaB05g23340 Brassica carinata HOM05D001685 ORTHO05D007488 5.6e-55 218.0 162 69.8
A02p05000 Brassica napus HOM05D001685 ORTHO05D007488 5.6e-55 218.0 162 69.8
HanXRQChr03g0079811 Helianthus annuus HOM05D001685 ORTHO05D007488 5.6e-55 218.0 153 72.5
Manes.15G014800 Manihot esculenta HOM05D001685 ORTHO05D007488 5.6e-55 218.0 149 73.8
CARHR194450 Cardamine hirsuta HOM05D001685 ORTHO05D007488 7.3e-55 217.6 162 69.8
FvH4_4g17620 Fragaria vesca HOM05D001685 ORTHO05D007488 9.5e-55 217.2 149 73.2
FAN12G0539 Fragaria x ananassa HOM05D001685 ORTHO05D007488 9.5e-55 217.2 149 73.2
FAN12G2140 Fragaria x ananassa HOM05D001685 ORTHO05D007488 9.5e-55 217.2 149 73.2
Glyma.13G216800 Glycine max HOM05D001685 ORTHO05D007488 9.5e-55 217.2 149 73.2
Thhalv10012865m.g Eutrema salsugineum HOM05D001685 ORTHO05D007488 1.2e-54 216.9 161 69.6
AT5G18570 Arabidopsis thaliana HOM05D001685 ORTHO05D007488 1.6e-54 216.5 161 68.9
ECA240G2366 Erigeron canadensis HOM05D001685 ORTHO05D007488 1.6e-54 216.5 153 71.9
Prupe.1G139700 Prunus persica HOM05D001685 ORTHO05D007488 1.6e-54 216.5 149 73.2
FAN07G1165 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.1e-54 216.1 149 72.5
FAN17G0087 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.1e-54 216.1 149 72.5
Gohir.A10G162200 Gossypium hirsutum HOM05D001685 ORTHO05D007488 2.1e-54 216.1 149 73.8
Gorai.011G188100 Gossypium raimondii HOM05D001685 ORTHO05D007488 2.1e-54 216.1 149 73.8
RcHm_v2.0_Chr4g0421541 Rosa chinensis HOM05D001685 ORTHO05D007488 2.1e-54 216.1 149 72.5
Sp6g25760 Schrenkiella parvula HOM05D001685 ORTHO05D007488 2.1e-54 216.1 161 68.9
QL06p008035 Quercus lobata HOM05D001685 ORTHO05D007488 2.8e-54 215.7 150 73.3
Solyc01g067530.3 Solanum lycopersicum HOM05D001685 ORTHO05D007488 2.8e-54 215.7 153 71.9
Sopen01g029480 Solanum pennellii HOM05D001685 ORTHO05D007488 2.8e-54 215.7 153 71.9
Aa31LG11G11050 Aethionema arabicum HOM05D001685 ORTHO05D007488 3.6e-54 215.3 174 64.9
Phvul.006G163000 Phaseolus vulgaris HOM05D001685 ORTHO05D007488 3.6e-54 215.3 149 73.2
SalBow2G3264 Salvia bowleyana HOM05D001685 ORTHO05D007488 3.6e-54 215.3 148 73.0
MSTRG.3936 Avicennia marina HOM05D001685 ORTHO05D007488 4.7e-54 214.9 148 71.6
MELO3C006624.2 Cucumis melo HOM05D001685 ORTHO05D007488 4.7e-54 214.9 149 75.8
VMungo0540G1912 Vigna mungo HOM05D001685 ORTHO05D007488 4.7e-54 214.9 149 73.2
CAN.G580.1 Capsicum annuum HOM05D001685 ORTHO05D007488 6.2e-54 214.5 153 71.2
Sed0007220 Sechium edule HOM05D001685 ORTHO05D007488 6.2e-54 214.5 149 76.5
Thecc.04G280200 Theobroma cacao HOM05D001685 ORTHO05D007488 6.2e-54 214.5 149 73.8
ClCG00G005760 Citrullus lanatus HOM05D001685 ORTHO05D007488 8.1e-54 214.2 149 75.8
ClCG05G005930 Citrullus lanatus HOM05D001685 ORTHO05D007488 8.1e-54 214.2 149 75.8
COL.COLO4_13905 Corchorus olitorius HOM05D001685 ORTHO05D007488 8.1e-54 214.2 149 73.2
Nitab4.5_0000644g0130 Nicotiana tabacum HOM05D001685 ORTHO05D007488 8.1e-54 214.2 153 71.9
Zm00001eb111050 Zea mays HOM05D001685 ORTHO05D007488 8.1e-54 214.2 149 71.8
Lsat_1_v5_gn_5_51241 Lactuca sativa HOM05D001685 ORTHO05D007488 1.4e-53 213.4 153 71.9
Os07g0669200 Oryza sativa ssp. japonica HOM05D001685 ORTHO05D007488 1.8e-53 213.0 149 71.1
Migut.G00277 Erythranthe guttata HOM05D001685 ORTHO05D007488 2.3e-53 212.6 148 70.3
Ca_00557_v3 Cicer arietinum L. HOM05D001685 ORTHO05D007488 3.1e-53 212.2 149 72.5
Lj6g0018727 Lotus japonicus HOM05D001685 ORTHO05D007488 3.1e-53 212.2 149 71.8
Nitab4.5_0000784g0140 Nicotiana tabacum HOM05D001685 ORTHO05D007488 3.1e-53 212.2 153 71.2
Prupe.1G145700 Prunus persica HOM05D001685 ORTHO05D007488 4.0e-53 211.8 149 71.8
Oeu021113.2 Olea europaea HOM05D001685 ORTHO05D007488 5.2e-53 211.5 148 73.0
TPR.G35520 Trifolium pratense HOM05D001685 ORTHO05D007488 8.9e-53 210.7 149 72.5
SEGI_37784 Sequoiadendron giganteum HOM05D001685 ORTHO05D007488 1.2e-52 210.3 152 69.7
Medtr2g019790 Medicago truncatula HOM05D001685 ORTHO05D007488 2.6e-52 209.1 149 71.8
DCAR_024555 Daucus carota HOM05D001685 ORTHO05D007488 5.8e-52 208.0 153 69.9
Peaxi162Scf00386g00526 Petunia axillaris HOM05D001685 ORTHO05D007488 7.6e-52 207.6 153 69.3
Potri.010G022400 Populus trichocarpa HOM05D001685 ORTHO05D007488 2.2e-51 206.1 149 69.1
HPP92_001325 Vanilla planifolia HOM05D001685 ORTHO05D007488 2.2e-51 206.1 153 70.6
Sabra10G0015900 Salix brachista HOM05D001685 ORTHO05D007488 2.9e-51 205.7 153 66.7
EL10Ac3g06577 Beta vulgaris HOM05D001685 ORTHO05D007488 1.3e-48 196.8 151 66.9
CsaV3_3G014310 Cucumis sativus L. HOM05D001685 ORTHO05D007488 3.9e-48 195.3 149 70.5
AL9U11240 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 5.1e-48 194.9 132 75.8
AL9U11270 Arabidopsis lyrata HOM05D001685 ORTHO05D007488 6.6e-48 194.5 132 75.8
Psat1g189920 Pisum sativum HOM05D001685 ORTHO05D007488 6.6e-48 194.5 149 67.1
CSS0036229 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 8.6e-48 194.1 134 76.1
SMO169G0319 Selaginella moellendorffii HOM05D001685 ORTHO05D007488 2.5e-47 192.6 150 64.7
BcaC03g13609 Brassica carinata HOM05D001685 ORTHO05D007488 3.6e-46 188.7 137 70.8
Mapoly0136s0003 Marchantia polymorpha HOM05D001685 ORTHO05D007488 4.0e-45 185.3 150 62.0
Pp3c7_19740 Physcomitrium patens HOM05D001685 ORTHO05D007488 8.9e-45 184.1 155 59.4
Glyma.15G095700 Glycine max HOM05D001685 ORTHO05D007488 1.1e-42 177.2 132 69.7
AagrBONN_evm.TU.Sc2ySwM_368.2660 Anthoceros agrestis HOM05D001685 ORTHO05D007488 2.4e-42 176.0 150 60.7
CSS0015415 Camellia sinensis var. sinensis HOM05D001685 ORTHO05D007488 1.6e-41 173.3 153 64.7
CBR_g24048 Chara braunii HOM05D001685 ORTHO05D007488 1.5e-39 166.8 156 55.1
Lj3C814G4 Lonicera japonica HOM05D001685 ORTHO05D007488 6.2e-38 161.4 132 65.9
MCO11G224 Micromonas commoda HOM05D001685 ORTHO05D007488 1.4e-34 150.2 155 51.6
Cre10.g433100 Chlamydomonas reinhardtii HOM05D001685 ORTHO05D007488 7.1e-34 147.9 152 52.0
FAN22G0503 Fragaria x ananassa HOM05D001685 ORTHO05D007488 2.7e-33 146.0 128 60.9
PRCOL_00003567 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 2.5e-31 139.4 160 48.1
GSVIVG01017775001 Vitis vinifera HOM05D001685 ORTHO05D007488 2.4e-29 132.9 130 57.7
AUR62042645 Chenopodium quinoa HOM05D001685 ORTHO05D007488 2.0e-28 129.8 153 51.0
Cfa024527 Carpinus fangiana HOM05D001685 ORTHO05D122472 4.3e-15 85.5 90 46.7
CBR_g39640 Chara braunii HOM05D001685 ORTHO05D006653 1.8e-13 80.1 123 38.2
Gohir.D10G168700 Gossypium hirsutum HOM05D001685 ORTHO05D007488 2.4e-13 79.7 70 64.3
Duzib150G0753 Durio zibethinus HOM05D001685 ORTHO05D006653 4.1e-13 79.0 93 45.2
HanXRQChr05g0134921 Helianthus annuus HOM05D001685 ORTHO05D006653 4.1e-13 79.0 112 41.1
Migut.J01517 Erythranthe guttata HOM05D001685 ORTHO05D006653 5.3e-13 78.6 100 45.0
ECA236G2424 Erigeron canadensis HOM05D001685 ORTHO05D006653 6.9e-13 78.2 117 40.2
TAR381G0153 Trochodendron aralioides HOM05D001685 ORTHO05D006653 1.2e-12 77.4 97 44.3
Psat6g138600 Pisum sativum HOM05D001685 ORTHO05D006653 1.5e-12 77.0 100 44.0
PGR083G0190 Punica granatum HOM05D001685 ORTHO05D006653 2.0e-12 76.6 100 44.0
TAR636G3542 Trochodendron aralioides HOM05D001685 ORTHO05D006653 2.0e-12 76.6 128 36.7
Atru.chr3.3899 Acer truncatum HOM05D001685 ORTHO05D006653 3.4e-12 75.9 100 44.0
TPR.G18576 Trifolium pratense HOM05D001685 ORTHO05D006653 4.5e-12 75.5 100 42.0
Ca_09792_v3 Cicer arietinum L. HOM05D001685 ORTHO05D006653 1.0e-11 74.3 100 43.0
Oeu052796.1 Olea europaea HOM05D001685 ORTHO05D006653 1.7e-11 73.6 100 42.0
Lalb_Chr19g0128141 Lupinus albus HOM05D001685 ORTHO05D006653 2.2e-11 73.2 97 45.4
Lsat_1_v5_gn_8_73061 Lactuca sativa HOM05D001685 ORTHO05D006653 3.8e-11 72.4 100 40.0
arahy.Tifrunner.gnm1.ann1.KF4YKV Arachis hypogaea HOM05D001685 ORTHO05D006653 5.0e-11 72.0 100 41.0
arahy.Tifrunner.gnm1.ann1.ZC6F0H Arachis hypogaea HOM05D001685 ORTHO05D006653 5.0e-11 72.0 100 41.0
arahy.Tifrunner.gnm1.ann1.B8I18B Arachis hypogaea HOM05D001685 ORTHO05D006653 6.5e-11 71.6 100 41.0
Cc10_g08830 Coffea canephora HOM05D001685 ORTHO05D006653 6.5e-11 71.6 135 34.8
Os11g0704300 Oryza sativa ssp. japonica HOM05D001685 ORTHO05D006653 1.1e-10 70.9 97 40.2
HPP92_014383 Vanilla planifolia HOM05D001685 ORTHO05D006653 1.1e-10 70.9 100 40.0
CiPaw.13G094700 Carya illinoinensis HOM05D001685 ORTHO05D006653 1.4e-10 70.5 100 41.0
AUR62009576 Chenopodium quinoa HOM05D001685 ORTHO05D006653 1.4e-10 70.5 100 39.0
Haze_24093 Corylus avellana HOM05D001685 ORTHO05D006653 1.4e-10 70.5 100 40.0
AUR62001788 Chenopodium quinoa HOM05D001685 ORTHO05D006653 2.5e-10 69.7 100 39.0
Medtr1g073010 Medicago truncatula HOM05D001685 ORTHO05D006653 2.5e-10 69.7 143 34.3
Nitab4.5_0000317g0040 Nicotiana tabacum HOM05D001685 ORTHO05D006653 2.5e-10 69.7 97 40.2
TWI79G0438 Tripterygium wilfordii HOM05D001685 ORTHO05D006653 3.2e-10 69.3 100 38.0
ATR0618G259 Amborella trichopoda HOM05D001685 ORTHO05D006653 5.5e-10 68.6 100 39.0
Cpa.g.sc81.154 Carica papaya HOM05D001685 ORTHO05D006653 7.1e-10 68.2 100 40.0
SEGI_41152 Sequoiadendron giganteum HOM05D001685 ORTHO05D006653 7.1e-10 68.2 116 33.6
A08p35550 Brassica napus HOM05D001685 ORTHO05D006653 1.2e-09 67.4 93 38.7
BraA08t35461Z Brassica rapa HOM05D001685 ORTHO05D006653 1.2e-09 67.4 93 38.7
VMungo1383G1510 Vigna mungo HOM05D001685 ORTHO05D006653 1.2e-09 67.4 100 41.0
SEGI_38445 Sequoiadendron giganteum HOM05D001685 ORTHO05D006653 2.1e-09 66.6 100 36.0
THA.LOC104826328 Tarenaya hassleriana HOM05D001685 ORTHO05D006653 2.1e-09 66.6 100 38.0
Cfa011498 Carpinus fangiana HOM05D002515 ORTHO05D006653 2.7e-09 66.2 100 38.0
Manes.07G091200 Manihot esculenta HOM05D001685 ORTHO05D006653 2.7e-09 66.2 100 41.0
Phvul.002G003900 Phaseolus vulgaris HOM05D001685 ORTHO05D006653 2.7e-09 66.2 100 41.0
BcaB03g13384 Brassica carinata HOM05D001685 ORTHO05D006653 3.5e-09 65.9 93 37.6
C08p03210 Brassica napus HOM05D001685 ORTHO05D006653 4.6e-09 65.5 93 37.6
BolC8t47119H Brassica oleracea HOM05D001685 ORTHO05D006653 4.6e-09 65.5 93 37.6
PSO384G4450 Papaver somniferum HOM05D001685 ORTHO05D006653 6.1e-09 65.1 100 38.0
PRCOL_00003098 Prasinoderma coloniale HOM05D001685 ORTHO05D007488 7.9e-09 64.7 149 31.5
VMungo1383G3233 Vigna mungo HOM05D001685 ORTHO05D006653 7.9e-09 64.7 100 40.0
Aa31sc36G30 Aethionema arabicum HOM05D001685 ORTHO05D006653 1.3e-08 63.9 100 36.0
Glyma.01G148100 Glycine max HOM05D001685 ORTHO05D006653 2.3e-08 63.2 100 40.0
Ah.07g200810 Amaranthus hybridus HOM05D001685 ORTHO05D007488 1.5e-07 60.5 48 58.3
Eucgr.B02369 Eucalyptus grandis HOM05D001685 ORTHO05D006653 1.9e-07 60.1 97 37.1
Gohir.A13G224400 Gossypium hirsutum HOM05D001685 ORTHO05D006653 1.9e-07 60.1 93 36.6
Gohir.D13G229400 Gossypium hirsutum HOM05D001685 ORTHO05D006653 1.9e-07 60.1 93 36.6
Gorai.013G260100 Gossypium raimondii HOM05D001685 ORTHO05D006653 1.9e-07 60.1 93 36.6
Lj3g0002633 Lotus japonicus HOM05D001685 ORTHO05D006653 1.9e-07 60.1 100 38.0
DCAR_005335 Daucus carota HOM05D001685 ORTHO05D006653 2.5e-07 59.7 100 37.0
Zm00001eb417820 Zea mays HOM05D001685 ORTHO05D006653 2.5e-07 59.7 97 37.1
DCAR_004329 Daucus carota HOM05D001685 ORTHO05D006653 3.3e-07 59.3 100 37.0
Prupe.6G078100 Prunus persica HOM05D001685 ORTHO05D006653 3.3e-07 59.3 100 35.0
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 7.4e-07 58.2 100 36.0
Aqoxy5G01203 Aquilegia oxysepala HOM05D001685 ORTHO05D006653 1.3e-06 57.4 100 34.0
Aqoxy4G02919 Aquilegia oxysepala HOM05D001685 ORTHO05D006653 3.7e-06 55.8 100 33.0
Actinidia07035 Actinidia chinensis HOM05D001685 ORTHO05D006653 8.2e-06 54.7 100 35.0


User provided reference genes

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