Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.3e-27 122.9 65 100.0
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 9.3e-27 122.9 65 100.0
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.0e-25 117.9 65 96.9
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.0e-25 117.9 65 96.9
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 3.5e-18 94.4 64 78.1
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.8e-17 92.0 64 73.4
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.0e-17 91.3 61 73.8
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 6.7e-17 90.1 63 69.8
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 8.7e-17 89.7 62 74.2
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 8.7e-17 89.7 63 74.6
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.9e-16 88.6 61 72.1
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 4.3e-16 87.4 63 69.8
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 5.7e-16 87.0 58 75.9
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 5.7e-16 87.0 63 71.4
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 7.4e-16 86.7 61 68.9
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 9.6e-16 86.3 64 68.8
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.3e-15 85.9 63 66.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.3e-15 85.9 63 66.7
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 2.1e-15 85.1 62 72.6
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.1e-15 85.1 63 66.7
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 3.7e-15 84.3 60 71.7
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 4.8e-15 84.0 63 65.1
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 6.3e-15 83.6 63 66.7
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 8.2e-15 83.2 62 69.4
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.4e-14 82.4 62 64.5
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 1.4e-14 82.4 63 66.7
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 1.8e-14 82.0 63 69.8
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 3.1e-14 81.3 63 63.5
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 3.1e-14 81.3 63 63.5
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.1e-14 80.9 63 63.5
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.1e-14 80.9 63 63.5
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 4.1e-14 80.9 63 66.7
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 4.1e-14 80.9 63 69.8
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 6.9e-14 80.1 62 66.1
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 9.0e-14 79.7 63 65.1
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 9.0e-14 79.7 62 62.9
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.2e-13 79.3 60 63.3
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.5e-13 79.0 63 63.5
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 1.5e-13 79.0 64 64.1
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 2.0e-13 78.6 64 64.1
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 2.6e-13 78.2 62 64.5
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.6e-13 78.2 61 62.3
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 4.5e-13 77.4 62 64.5
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 4.5e-13 77.4 62 64.5
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 4.5e-13 77.4 56 67.9
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 4.5e-13 77.4 56 67.9
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 4.5e-13 77.4 62 64.5
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 5.9e-13 77.0 61 60.7
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 5.9e-13 77.0 61 60.7
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 7.6e-13 76.6 62 62.9
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.0e-12 76.3 62 62.9
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.3e-12 75.9 62 62.9
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.2e-12 75.1 63 61.9
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 2.9e-12 74.7 56 64.3
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 2.9e-12 74.7 61 65.6
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.9e-12 74.7 62 62.9
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 3.8e-12 74.3 58 62.1
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.0e-12 73.9 56 64.3
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 5.0e-12 73.9 56 64.3
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 5.0e-12 73.9 64 64.1
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 5.0e-12 73.9 62 61.3
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 5.0e-12 73.9 62 59.7
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 6.5e-12 73.6 56 66.1
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 8.4e-12 73.2 63 61.9
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 1.1e-11 72.8 56 64.3
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 1.1e-11 72.8 56 64.3
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.1e-11 72.8 56 64.3
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.4e-11 72.4 58 58.6
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.4e-11 72.4 51 68.6
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.9e-11 72.0 56 62.5
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.9e-11 72.0 56 62.5
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.9e-11 72.0 62 61.3
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.9e-11 72.0 62 61.3
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.9e-11 72.0 62 59.7
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 2.5e-11 71.6 64 60.9
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 2.5e-11 71.6 56 58.9
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 3.2e-11 71.2 56 62.5
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 3.2e-11 71.2 56 64.3
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.2e-11 71.2 56 60.7
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.2e-11 70.9 62 59.7
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.2e-11 70.9 58 53.4
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.2e-11 70.9 58 53.4
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 5.5e-11 70.5 56 64.3
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 7.2e-11 70.1 51 66.7
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 9.3e-11 69.7 53 60.4
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 9.3e-11 69.7 62 59.7
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.2e-10 69.3 53 58.5
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 1.2e-10 69.3 62 54.8
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.6e-10 68.9 56 60.7
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 3.5e-10 67.8 56 60.7
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 3.5e-10 67.8 62 53.2
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 3.5e-10 67.8 50 64.0
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 3.5e-10 67.8 51 62.7
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 3.5e-10 67.8 53 58.5
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.6e-10 67.4 64 56.2
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 4.6e-10 67.4 64 56.2
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 4.6e-10 67.4 62 54.8
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 4.6e-10 67.4 62 51.6
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 6.1e-10 67.0 50 62.0
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 6.1e-10 67.0 63 54.0
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.0e-09 66.2 64 54.7
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.0e-09 66.2 61 55.7
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.3e-09 65.9 51 60.8
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 1.3e-09 65.9 56 57.1
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 1.3e-09 65.9 56 57.1
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.8e-09 65.5 62 51.6
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.8e-09 65.5 57 56.1
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 2.3e-09 65.1 62 54.8
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 3.0e-09 64.7 56 51.8
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 3.0e-09 64.7 61 54.1
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 3.9e-09 64.3 56 58.9
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 3.9e-09 64.3 63 57.1
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 5.1e-09 63.9 61 55.7
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 6.7e-09 63.5 56 57.1
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 6.7e-09 63.5 63 54.0
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.7e-09 63.5 52 59.6
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 6.7e-09 63.5 52 59.6
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 6.7e-09 63.5 56 57.1
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 8.7e-09 63.2 62 54.8
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 8.7e-09 63.2 62 54.8
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 8.7e-09 63.2 62 54.8
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 8.7e-09 63.2 68 51.5
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 8.7e-09 63.2 63 57.1
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 1.1e-08 62.8 62 54.8
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 1.1e-08 62.8 56 57.1
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.1e-08 62.8 56 55.4
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.1e-08 62.8 56 57.1
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 1.1e-08 62.8 60 61.7
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 1.1e-08 62.8 51 58.8
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 1.1e-08 62.8 62 53.2
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 1.1e-08 62.8 62 48.4
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 1.1e-08 62.8 51 60.8
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 1.5e-08 62.4 56 55.4
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.5e-08 62.4 56 55.4
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.9e-08 62.0 53 58.5
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.9e-08 62.0 56 57.1
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 2.5e-08 61.6 56 53.6
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.5e-08 61.6 63 54.0
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.5e-08 61.6 62 51.6
Zm00001eb005680 Zea mays HOM05D004166 ORTHO05D004992 2.5e-08 61.6 63 57.1
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 3.3e-08 61.2 51 56.9
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.3e-08 60.8 50 62.0
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 5.7e-08 60.5 39 74.4
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 5.7e-08 60.5 54 53.7
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 9.7e-08 59.7 50 54.0
Zm00001eb272450 Zea mays HOM05D004166 ORTHO05D004992 9.7e-08 59.7 63 55.6
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 1.6e-07 58.9 62 50.0
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 2.2e-07 58.5 53 54.7
Lalb_Chr25g0283111 Lupinus albus HOM05D004166 ORTHO05D004992 3.7e-07 57.8 63 49.2
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 4.8e-07 57.4 53 52.8
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 4.8e-07 57.4 53 52.8
Zm00001eb076920 Zea mays HOM05D004166 ORTHO05D004992 6.3e-07 57.0 61 55.7
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 8.2e-07 56.6 63 49.2
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.1e-06 56.2 56 46.4
Zm00001eb256610 Zea mays HOM05D004166 ORTHO05D004992 1.8e-06 55.5 61 52.5
Zm00001eb018710 Zea mays HOM05D004166 ORTHO05D004992 2.4e-06 55.1 61 52.5
Zm00001eb056460 Zea mays HOM05D004166 ORTHO05D004992 3.1e-06 54.7 61 52.5


User provided reference genes

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