Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050092 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.2e-99 365.5 171 100.0
CSS0031502 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.3e-88 329.7 167 93.4
CSS0028931 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.9e-88 328.6 167 93.4
CSS0000454 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.1e-87 326.6 167 92.2
CSS0050453 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 5.5e-87 324.3 167 91.6
CSS0004487 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.5e-71 273.1 171 80.1
CSS0033656 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.7e-70 268.1 167 79.0
CSS0044724 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.9e-67 258.8 171 76.6
CSS0024873 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.3e-64 249.2 171 74.3
CSS0016678 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.1e-61 238.8 171 71.3
Rhsim10G0191400 Rhododendron simsii HOM05D000649 ORTHO05D000513 3.4e-28 129.0 93 65.6
vmacro20607 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 7.1e-26 121.3 97 58.8
Cpa.g.sc26.10 Carica papaya HOM05D000649 ORTHO05D000513 2.5e-23 112.8 109 46.8
TAR628G0170 Trochodendron aralioides HOM05D000649 ORTHO05D000513 3.3e-23 112.5 112 50.0
Actinidia22858 Actinidia chinensis HOM05D000649 ORTHO05D000513 4.8e-22 108.6 94 59.6
Nn5g31051 Nelumbo nucifera HOM05D000649 ORTHO05D000513 6.2e-22 108.2 86 57.0
TAR381G0051 Trochodendron aralioides HOM05D000649 ORTHO05D000513 4.0e-21 105.5 97 48.5
Hma1.2p1_0085F.1_g044350 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 5.3e-21 105.1 86 52.3
Atru.chr13.58 Acer truncatum HOM05D000649 ORTHO05D000513 1.2e-20 104.0 100 50.0
Manes.05G127900 Manihot esculenta HOM05D000649 ORTHO05D000513 1.5e-20 103.6 100 49.0
Potri.002G004600 Populus trichocarpa HOM05D000649 ORTHO05D000513 2.0e-20 103.2 112 46.4
TAR376G0834 Trochodendron aralioides HOM05D000649 ORTHO05D000513 3.4e-20 102.4 93 50.5
Prupe.5G005300 Prunus persica HOM05D000649 ORTHO05D000513 5.8e-20 101.7 109 43.1
Hma1.2p1_0699F.1_g205730 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 1.0e-19 100.9 93 47.3
CiPaw.07G133300 Carya illinoinensis HOM05D000649 ORTHO05D000513 2.2e-19 99.8 87 49.4
THA.LOC104813737 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 3.8e-19 99.0 86 47.7
AL2G36600 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 4.9e-19 98.6 100 44.0
PSO675G8806 Papaver somniferum HOM05D000649 ORTHO05D000513 6.5e-19 98.2 140 37.9
CARHR070020 Cardamine hirsuta HOM05D000649 ORTHO05D000513 8.4e-19 97.8 93 46.2
Glyma.06G014300 Glycine max HOM05D000649 ORTHO05D000513 8.4e-19 97.8 86 48.8
Lalb_Chr08g0246551 Lupinus albus HOM05D000649 ORTHO05D000513 8.4e-19 97.8 97 43.3
Nitab4.5_0010897g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 8.4e-19 97.8 86 50.0
PGSC0003DMG400009999 Solanum tuberosum HOM05D000649 ORTHO05D000513 8.4e-19 97.8 105 43.8
Actinidia17079 Actinidia chinensis HOM05D000649 ORTHO05D000513 1.1e-18 97.4 78 53.8
CSS0025109 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 1.1e-18 97.4 93 48.4
Dinv13765 Davidia involucrata HOM05D000649 ORTHO05D000513 1.1e-18 97.4 93 48.4
Sopen04g036410 Solanum pennellii HOM05D000649 ORTHO05D000513 1.1e-18 97.4 93 46.2
Sabra02G0003100 Salix brachista HOM05D000649 ORTHO05D000513 1.4e-18 97.1 118 41.5
Aqoxy6G02997 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 1.9e-18 96.7 86 52.3
MBI01_g28406_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 1.9e-18 96.7 123 44.7
VMungo1309G1435 Vigna mungo HOM05D000649 ORTHO05D000513 1.9e-18 96.7 86 47.7
arahy.Tifrunner.gnm1.ann1.T7FLND Arachis hypogaea HOM05D000649 ORTHO05D000513 2.5e-18 96.3 93 47.3
Carub.0002s2338 Capsella rubella HOM05D000649 ORTHO05D000513 2.5e-18 96.3 93 45.2
Haze_22865 Corylus avellana HOM05D000649 ORTHO05D000513 2.5e-18 96.3 93 46.2
Cc10_g00240 Coffea canephora HOM05D000649 ORTHO05D000513 4.2e-18 95.5 97 43.3
Lalb_Chr23g0265501 Lupinus albus HOM05D000649 ORTHO05D000513 4.2e-18 95.5 79 49.4
Sp5g31630 Schrenkiella parvula HOM05D000649 ORTHO05D000513 4.2e-18 95.5 116 41.4
AT1G76460 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 5.5e-18 95.1 93 44.1
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 7.1e-18 94.7 120 41.7
Thhalv10018983m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 7.1e-18 94.7 93 44.1
Ca_04244_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 9.3e-18 94.4 117 41.0
Ca_15383_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 9.3e-18 94.4 117 41.0
PSO541G2048 Papaver somniferum HOM05D000649 ORTHO05D000513 9.3e-18 94.4 140 35.7
Eucgr.J02558 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.2e-17 94.0 86 47.7
CiPaw.08G077300 Carya illinoinensis HOM05D000649 ORTHO05D000513 1.6e-17 93.6 111 41.4
Glyma.04G014300 Glycine max HOM05D000649 ORTHO05D000513 1.6e-17 93.6 88 47.7
Lalb_Chr11g0061361 Lupinus albus HOM05D000649 ORTHO05D000513 1.6e-17 93.6 81 48.1
Lj1g0016936 Lotus japonicus HOM05D000649 ORTHO05D000513 2.1e-17 93.2 93 43.0
Nn6g31618 Nelumbo nucifera HOM05D000649 ORTHO05D000513 2.1e-17 93.2 86 51.2
Actinidia15526 Actinidia chinensis HOM05D000649 ORTHO05D000513 2.7e-17 92.8 78 51.3
TWI36G1513 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 2.7e-17 92.8 93 48.4
A07p42130 Brassica napus HOM05D000649 ORTHO05D000513 3.5e-17 92.4 93 45.2
COL.COLO4_12296 Corchorus olitorius HOM05D000649 ORTHO05D000513 3.5e-17 92.4 93 44.1
Manes.18G001800 Manihot esculenta HOM05D000649 ORTHO05D000513 4.6e-17 92.0 76 53.9
Prupe.7G186900 Prunus persica HOM05D000649 ORTHO05D000513 4.6e-17 92.0 86 46.5
Gohir.D01G086900 Gossypium hirsutum HOM05D000649 ORTHO05D000513 6.0e-17 91.7 118 40.7
Gorai.002G112500 Gossypium raimondii HOM05D000649 ORTHO05D000513 6.0e-17 91.7 118 40.7
Lj2C505G3 Lonicera japonica HOM05D000649 ORTHO05D000513 6.0e-17 91.7 100 45.0
Medtr3g116130 Medicago truncatula HOM05D000649 ORTHO05D000513 6.0e-17 91.7 118 40.7
Psat5g008440 Pisum sativum HOM05D000649 ORTHO05D000513 6.0e-17 91.7 100 43.0
Potri.005G256700 Populus trichocarpa HOM05D000649 ORTHO05D000513 6.0e-17 91.7 112 40.2
Sc26g0004760 Simmondsia chinensis HOM05D000649 ORTHO05D000513 6.0e-17 91.7 80 48.8
Gohir.A01G101800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 7.9e-17 91.3 119 41.2
MD06G1004000 Malus domestica HOM05D000649 ORTHO05D000513 7.9e-17 91.3 79 48.1
Rhsim06G0003000 Rhododendron simsii HOM05D000649 ORTHO05D000513 7.9e-17 91.3 77 50.6
Thecc.08G099600 Theobroma cacao HOM05D000649 ORTHO05D000513 1.0e-16 90.9 81 45.7
Dinv05494 Davidia involucrata HOM05D000649 ORTHO05D000513 1.3e-16 90.5 93 43.0
FAN23G1151 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.3e-16 90.5 82 48.8
FAN26G0796 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.3e-16 90.5 82 48.8
Sabra05G0198800 Salix brachista HOM05D000649 ORTHO05D000513 1.3e-16 90.5 79 49.4
BcaC08g47242 Brassica carinata HOM05D000649 ORTHO05D000513 1.8e-16 90.1 93 44.1
C06p50700 Brassica napus HOM05D000649 ORTHO05D000513 1.8e-16 90.1 93 44.1
BolC6t40096H Brassica oleracea HOM05D000649 ORTHO05D000513 1.8e-16 90.1 93 44.1
THA.LOC104812008 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 1.8e-16 90.1 93 40.9
Duzib116G0655 Durio zibethinus HOM05D000649 ORTHO05D000513 2.3e-16 89.7 84 44.0
FvH4_1g09990 Fragaria vesca HOM05D000649 ORTHO05D000513 3.0e-16 89.4 85 48.2
FAN23G2635 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.0e-16 89.4 82 48.8
QL02p015755 Quercus lobata HOM05D000649 ORTHO05D000513 3.0e-16 89.4 74 50.0
BcaC08g47153 Brassica carinata HOM05D000649 ORTHO05D000513 5.1e-16 88.6 93 43.0
TWI56G0525 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 5.1e-16 88.6 93 47.3
DCAR_016799 Daucus carota HOM05D000649 ORTHO05D000513 6.7e-16 88.2 90 47.8
Phvul.009G008600 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 6.7e-16 88.2 86 45.3
Aa31LG4G6550 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.1e-15 87.4 94 42.6
Ciclev10003364m.g Citrus clementina HOM05D000649 ORTHO05D000513 1.1e-15 87.4 77 48.1
RcHm_v2.0_Chr2g0096781 Rosa chinensis HOM05D000649 ORTHO05D000513 1.1e-15 87.4 85 45.9
BraA07t31742Z Brassica rapa HOM05D000649 ORTHO05D000513 1.5e-15 87.0 93 43.0
TWI12G0980 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 1.5e-15 87.0 93 46.2
MD00G1148300 Malus domestica HOM05D000649 ORTHO05D000513 1.9e-15 86.7 111 38.7
FAN28G0025 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.5e-15 86.3 100 45.0
Duzib093G1313 Durio zibethinus HOM05D000649 ORTHO05D000513 3.3e-15 85.9 88 44.3
arahy.Tifrunner.gnm1.ann1.63TST2 Arachis hypogaea HOM05D000649 ORTHO05D000513 4.3e-15 85.5 94 44.7
DCAR_013943 Daucus carota HOM05D000649 ORTHO05D014141 4.3e-15 85.5 80 48.8
Aa31LG7G5040 Aethionema arabicum HOM05D000649 ORTHO05D000513 5.7e-15 85.1 122 38.5
Migut.N02989 Erythranthe guttata HOM05D000649 ORTHO05D000513 1.3e-14 84.0 80 42.5
Eucgr.I02201 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.3e-14 84.0 85 45.9
SalBow6G0043 Salvia bowleyana HOM05D000649 ORTHO05D000513 1.3e-14 84.0 80 43.8
ClCG08G009160 Citrullus lanatus HOM05D000649 ORTHO05D000513 1.6e-14 83.6 93 43.0
PGR083G0393 Punica granatum HOM05D000649 ORTHO05D000513 1.6e-14 83.6 98 43.9
TPR.G38167 Trifolium pratense HOM05D000649 ORTHO05D000513 2.8e-14 82.8 93 41.9
vmacro21765 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 2.8e-14 82.8 88 44.3
Oeu039086.1 Olea europaea HOM05D000649 ORTHO05D014141 3.7e-14 82.4 71 49.3
MELO3C026514.2 Cucumis melo HOM05D000649 ORTHO05D000513 6.2e-14 81.6 93 41.9
CsaV3_6G035960 Cucumis sativus L. HOM05D000649 ORTHO05D000513 6.2e-14 81.6 93 41.9
CDE05G1430 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 1.1e-13 80.9 79 40.5
HanXRQChr16g0532161 Helianthus annuus HOM05D000649 ORTHO05D000513 1.1e-13 80.9 96 39.6
SGA_v2.0_scaffold220G42643 Striga asiatica HOM05D000649 ORTHO05D000513 1.1e-13 80.9 94 36.2
Eucgr.F03603 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.4e-13 80.5 85 47.1
HanXRQChr09g0241921 Helianthus annuus HOM05D000649 ORTHO05D000513 1.4e-13 80.5 93 44.1
PSO017G1691 Papaver somniferum HOM05D000649 ORTHO05D000513 1.4e-13 80.5 93 44.1
ECA246G2133 Erigeron canadensis HOM05D000649 ORTHO05D000513 3.1e-13 79.3 91 39.6
Lj4C242G3 Lonicera japonica HOM05D000649 ORTHO05D000513 3.1e-13 79.3 92 41.3
MD15G1228000 Malus domestica HOM05D000649 ORTHO05D000513 4.1e-13 79.0 73 49.3
Oeu042506.1 Olea europaea HOM05D000649 ORTHO05D000513 4.1e-13 79.0 126 33.3
ATR0605G253 Amborella trichopoda HOM05D000649 ORTHO05D000513 5.3e-13 78.6 70 44.3
MSTRG.24518 Avicennia marina HOM05D000649 ORTHO05D000513 5.3e-13 78.6 87 36.8
ECA238G0875 Erigeron canadensis HOM05D000649 ORTHO05D000513 5.3e-13 78.6 132 34.1
Thhalv10008444m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 5.3e-13 78.6 115 40.0
Sed0009990 Sechium edule HOM05D000649 ORTHO05D000513 6.9e-13 78.2 87 39.1
Oeu030360.2 Olea europaea HOM05D000649 ORTHO05D000513 9.0e-13 77.8 73 47.9
CANSAT25G2852 Cannabis sativa HOM05D000649 ORTHO05D000513 1.2e-12 77.4 93 39.8
Manes.02G116700 Manihot esculenta HOM05D000649 ORTHO05D000513 2.6e-12 76.3 95 42.1
AL1G33900 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 3.4e-12 75.9 116 37.1
RcHm_v2.0_Chr7g0216701 Rosa chinensis HOM05D000649 ORTHO05D000513 3.4e-12 75.9 93 41.9
ECA232G1614 Erigeron canadensis HOM05D000649 ORTHO05D000513 4.5e-12 75.5 78 47.4
MBI04_g31210_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 4.5e-12 75.5 67 49.3
MD02G1108800 Malus domestica HOM05D000649 ORTHO05D000513 4.5e-12 75.5 73 46.6
AUR62035172 Chenopodium quinoa HOM05D000649 ORTHO05D000513 7.6e-12 74.7 101 39.6
unitig_578.g16241 Utricularia gibba HOM05D000649 ORTHO05D000513 7.6e-12 74.7 80 41.2
CDE05G1023 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 1.7e-11 73.6 79 38.0
Ciclev10026337m.g Citrus clementina HOM05D000649 ORTHO05D000513 1.7e-11 73.6 80 38.8
Sed0025783 Sechium edule HOM05D000649 ORTHO05D000513 1.7e-11 73.6 93 38.7
AT1G20880 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 2.2e-11 73.2 74 45.9
Cc07_g12210 Coffea canephora HOM05D000649 ORTHO05D000513 2.2e-11 73.2 72 47.2
MSTRG.22081 Avicennia marina HOM05D000649 ORTHO05D000513 5.0e-11 72.0 99 37.4
FAN08G0068 Fragaria x ananassa HOM05D000649 ORTHO05D000513 5.0e-11 72.0 105 39.0
FAN04G1603 Fragaria x ananassa HOM05D000649 ORTHO05D000513 6.5e-11 71.6 103 37.9
DCAR_009860 Daucus carota HOM05D000649 ORTHO05D000513 8.4e-11 71.2 87 40.2
FAN18G2507 Fragaria x ananassa HOM05D000649 ORTHO05D000513 8.4e-11 71.2 116 34.5
PGR031G0467 Punica granatum HOM05D000649 ORTHO05D000513 8.4e-11 71.2 92 35.9
Carub.0001s2035 Capsella rubella HOM05D000649 ORTHO05D000513 1.1e-10 70.9 108 34.3
Oeu013568.1 Olea europaea HOM05D000649 ORTHO05D000513 1.1e-10 70.9 71 40.8
SEGI_17423 Sequoiadendron giganteum HOM05D000649 ORTHO05D000513 1.4e-10 70.5 71 39.4
Lsat_1_v5_gn_9_48300 Lactuca sativa HOM05D000649 ORTHO05D000513 1.9e-10 70.1 84 45.2
BcaB03g14296 Brassica carinata HOM05D000649 ORTHO05D000513 2.5e-10 69.7 131 32.1
unitig_8.g4815 Utricularia gibba HOM05D000649 ORTHO05D000513 2.5e-10 69.7 83 37.3
BraA08t34853Z Brassica rapa HOM05D000649 ORTHO05D000513 5.5e-10 68.6 97 36.1
Eucgr.F01820 Eucalyptus grandis HOM05D000649 ORTHO05D000513 5.5e-10 68.6 86 38.4
Lj4A240G32 Lonicera japonica HOM05D000649 ORTHO05D000513 5.5e-10 68.6 70 42.9
FvH4_5g26080 Fragaria vesca HOM05D000649 ORTHO05D000513 1.2e-09 67.4 95 38.9
FAN13G1717 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.1e-09 66.6 88 38.6
HPP92_020532 Vanilla planifolia HOM05D000649 ORTHO05D014141 6.1e-09 65.1 65 38.5
SGA_v2.0_scaffold227G43163 Striga asiatica HOM05D000649 ORTHO05D000513 1.0e-08 64.3 94 30.9
BcaB07g32083 Brassica carinata HOM05D000649 ORTHO05D000513 1.8e-08 63.5 84 36.9
Hma1.2p1_0711F.1_g207530 Hydrangea macrophylla HOM05D000649 ORTHO05D014141 2.3e-08 63.2 58 46.6
Lj4P240T26 Lonicera japonica HOM05D000649 ORTHO05D014141 6.7e-08 61.6 84 34.5
BcaC07g39059 Brassica carinata HOM05D000649 ORTHO05D000513 8.7e-08 61.2 80 35.0
Lsat_1_v5_gn_3_69020 Lactuca sativa HOM05D000649 ORTHO05D000513 8.7e-08 61.2 92 39.1
BcaC06g34844 Brassica carinata HOM05D000649 ORTHO05D000513 1.1e-07 60.8 81 37.0
C07p22740 Brassica napus HOM05D000649 ORTHO05D000513 1.1e-07 60.8 81 37.0
BolC7t42806H Brassica oleracea HOM05D000649 ORTHO05D000513 1.1e-07 60.8 81 37.0
A07p15430 Brassica napus HOM05D000649 ORTHO05D000513 2.5e-07 59.7 111 31.5
C08p20430 Brassica napus HOM05D000649 ORTHO05D000513 2.5e-07 59.7 80 33.8
BolC8t49672H Brassica oleracea HOM05D000649 ORTHO05D000513 2.5e-07 59.7 80 33.8
BraA07t29282Z Brassica rapa HOM05D000649 ORTHO05D000513 2.5e-07 59.7 111 31.5
Os02g0714000 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 4.3e-07 58.9 126 30.2
Zm00001eb388030 Zea mays HOM05D000649 ORTHO05D000513 1.3e-06 57.4 101 32.7
Nitab4.5_0007250g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 4.8e-06 55.5 68 39.7
PGR119G0463 Punica granatum HOM05D000649 ORTHO05D000513 4.8e-06 55.5 70 40.0


User provided reference genes

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