Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 3.9e-75 284.6 137 100.0
CSS0011426 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 2.1e-12 76.3 47 74.5
CSS0047449 Camellia sinensis var. sinensis HOM05D002223 ORTHO05D009240 1.0e-11 73.9 64 60.9
CSS0029216 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D009086 5.2e-11 71.6 60 60.0
CSS0012919 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D009086 1.5e-10 70.1 60 58.3
CSS0013032 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D000165 4.4e-10 68.6 65 56.9
CSS0040047 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D109333 4.4e-10 68.6 48 66.7
CSS0025348 Camellia sinensis var. sinensis HOM05D026757 ORTHO05D009802 9.8e-10 67.4 72 54.2
CSS0028308 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D009802 9.8e-10 67.4 60 58.3
CSS0024975 Camellia sinensis var. sinensis HOM05D026757 ORTHO05D007247 6.3e-09 64.7 53 62.3
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 8.3e-09 64.3 33 84.8
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 8.3e-09 64.3 40 77.5
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 1.1e-08 63.9 33 84.8
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.4e-08 63.5 40 75.0
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 2.4e-08 62.8 40 72.5
CSS0037818 Camellia sinensis var. sinensis HOM05D006495 ORTHO05D009652 3.1e-08 62.4 66 48.5
CSS0038117 Camellia sinensis var. sinensis HOM05D007602 ORTHO05D009086 3.1e-08 62.4 60 55.0
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 3.1e-08 62.4 33 81.8
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 3.1e-08 62.4 40 72.5
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 3.1e-08 62.4 40 72.5
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 3.1e-08 62.4 40 72.5
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 3.1e-08 62.4 33 81.8
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 4.1e-08 62.0 40 70.0
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 5.4e-08 61.6 59 59.3
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 5.4e-08 61.6 33 81.8
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 7.0e-08 61.2 40 70.0
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 9.1e-08 60.8 33 78.8
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 9.1e-08 60.8 40 72.5
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 9.1e-08 60.8 40 72.5
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.2e-07 60.5 33 84.8
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 1.2e-07 60.5 33 84.8
CSS0007024 Camellia sinensis var. sinensis HOM05D026757 ORTHO05D007247 2.0e-07 59.7 71 50.7
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.0e-07 59.7 72 44.4
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 2.7e-07 59.3 33 81.8
CSS0018387 Camellia sinensis var. sinensis HOM05D018052 ORTHO05D009802 2.7e-07 59.3 64 51.6
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.7e-07 59.3 33 75.8
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 2.7e-07 59.3 33 75.8
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 4.5e-07 58.5 40 65.0
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 4.5e-07 58.5 42 71.4
CSS0021920 Camellia sinensis var. sinensis HOM05D026757 ORTHO05D009802 4.5e-07 58.5 53 58.5
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 4.5e-07 58.5 72 43.1
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 7.7e-07 57.8 42 66.7
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 1.0e-06 57.4 42 66.7
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.0e-06 57.4 72 43.1
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.0e-06 57.4 72 43.1
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.0e-06 57.4 72 43.1
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 1.0e-06 57.4 33 75.8
CSS0004827 Camellia sinensis var. sinensis HOM05D000035 ORTHO05D000009 1.3e-06 57.0 58 53.4
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.3e-06 57.0 41 68.3
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.3e-06 57.0 33 72.7
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 2.3e-06 56.2 30 76.7
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 2.3e-06 56.2 30 76.7
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.3e-06 56.2 39 71.8
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 2.9e-06 55.8 33 69.7
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 2.9e-06 55.8 33 72.7
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 2.9e-06 55.8 36 75.0
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 3.8e-06 55.5 33 69.7
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 3.8e-06 55.5 40 67.5
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.8e-06 55.5 30 86.7
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 3.8e-06 55.5 30 86.7
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 3.8e-06 55.5 39 66.7
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 3.8e-06 55.5 39 66.7
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 5.0e-06 55.1 33 66.7
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 5.0e-06 55.1 29 82.8
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 5.0e-06 55.1 33 69.7
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 5.0e-06 55.1 33 69.7
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 5.0e-06 55.1 33 72.7
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 5.0e-06 55.1 40 70.0
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 5.0e-06 55.1 33 75.8
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 5.0e-06 55.1 33 75.8
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 5.0e-06 55.1 41 63.4
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 5.0e-06 55.1 33 72.7
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 5.0e-06 55.1 34 67.6
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 6.6e-06 54.7 40 62.5
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 6.6e-06 54.7 33 72.7
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 8.6e-06 54.3 72 41.7
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 8.6e-06 54.3 33 72.7
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 8.6e-06 54.3 36 63.9


User provided reference genes

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