Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.8e-27 128.3 62 100.0
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 9.1e-24 115.9 62 90.3
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 3.8e-22 110.5 62 83.9
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 1.1e-21 109.0 62 80.6
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 1.9e-21 108.2 62 80.6
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 1.9e-21 108.2 62 80.6
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 3.3e-21 107.5 60 85.0
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 4.2e-21 107.1 60 85.0
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 5.5e-21 106.7 62 80.6
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 9.5e-21 105.9 62 80.6
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 1.2e-20 105.5 59 81.4
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 4.7e-20 103.6 62 79.0
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 6.1e-20 103.2 62 79.0
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 6.1e-20 103.2 62 75.8
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 8.0e-20 102.8 62 79.0
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 8.0e-20 102.8 62 79.0
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 8.0e-20 102.8 62 79.0
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 8.0e-20 102.8 62 74.2
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 8.0e-20 102.8 62 79.0
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 8.0e-20 102.8 62 75.8
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 1.0e-19 102.4 61 75.4
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 1.0e-19 102.4 62 75.8
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 1.0e-19 102.4 59 79.7
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 1.8e-19 101.7 62 77.4
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 5.2e-19 100.1 62 77.4
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 8.9e-19 99.4 62 71.0
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 1.2e-18 99.0 62 72.6
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 2.6e-18 97.8 61 73.8
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 2.6e-18 97.8 62 66.1
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 5.7e-18 96.7 62 69.4
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 5.7e-18 96.7 62 71.0
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 5.7e-18 96.7 58 79.3
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 7.5e-18 96.3 54 81.5
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 7.5e-18 96.3 54 81.5
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 1.3e-17 95.5 62 72.6
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 2.8e-17 94.4 61 70.5
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 6.3e-17 93.2 62 69.4
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 1.1e-16 92.4 63 69.8
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 1.1e-16 92.4 62 72.6
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 1.8e-16 91.7 62 69.4
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 2.4e-16 91.3 62 69.4
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 2.4e-16 91.3 62 69.4
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 5.4e-16 90.1 62 67.7
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 7.0e-16 89.7 57 73.7
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 7.0e-16 89.7 55 76.4
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 9.2e-16 89.4 62 69.4
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 2.0e-15 88.2 63 66.7
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 3.5e-15 87.4 63 66.7
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 5.9e-15 86.7 47 83.0
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 7.8e-15 86.3 62 67.7
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 7.8e-15 86.3 65 64.6
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 1.3e-14 85.5 62 64.5
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 5.0e-14 83.6 62 64.5
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 8.6e-14 82.8 47 76.6
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.1e-13 82.4 47 78.7
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 1.5e-13 82.0 62 64.5
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 1.5e-13 82.0 56 71.4
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.5e-13 81.3 55 70.9
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 3.3e-13 80.9 53 73.6
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 5.6e-13 80.1 59 64.4
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 2.1e-12 78.2 62 64.5
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 8.0e-12 76.3 52 69.2
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 1.0e-11 75.9 46 78.3
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.8e-11 75.1 48 72.9
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 3.1e-11 74.3 53 66.0
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 5.2e-11 73.6 53 66.0
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 2.0e-10 71.6 53 64.2
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 2.6e-10 71.2 53 64.2
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 2.6e-10 71.2 55 58.2
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 7.5e-10 69.7 51 62.7
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 7.5e-10 69.7 51 62.7
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 7.5e-10 69.7 51 62.7
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 7.5e-10 69.7 51 62.7
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 7.5e-10 69.7 50 64.0
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 9.8e-10 69.3 52 61.5
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 9.8e-10 69.3 51 62.7
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 1.7e-09 68.6 55 50.9
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 2.2e-09 68.2 51 64.7
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 3.7e-09 67.4 51 64.7
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 3.7e-09 67.4 51 64.7
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 8.3e-09 66.2 44 65.9
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 1.1e-08 65.9 51 64.7
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 1.1e-08 65.9 51 64.7
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 1.4e-08 65.5 51 60.8
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 1.7e-06 58.5 28 89.3
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 3.9e-06 57.4 35 74.3


User provided reference genes

Program Settings