Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.3e-210 735.3 383 100.0
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.6e-198 696.0 383 94.8
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 7.9e-150 534.3 383 74.9
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.1e-142 509.6 372 73.9
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.8e-139 498.4 339 77.0
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.0e-128 464.2 377 65.8
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.7e-128 463.4 387 64.3
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 5.5e-127 458.4 331 73.4
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 3.7e-123 445.7 315 74.3
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.6e-118 430.3 378 61.6
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.0e-117 427.6 377 62.1
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.4e-117 427.2 377 60.2
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.3e-116 422.5 377 59.7
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.3e-116 422.5 385 59.0
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 4.4e-116 422.2 386 60.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 8.2e-115 417.9 379 59.6
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.4e-114 417.2 375 60.5
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.4e-114 416.4 385 60.5
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 3.1e-114 416.0 377 59.7
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 3.1e-114 416.0 377 59.7
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 5.3e-114 415.2 377 58.9
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-113 414.1 377 59.7
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.5e-113 412.1 375 60.8
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.9e-113 411.8 379 59.9
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.9e-113 411.8 377 59.4
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 5.9e-113 411.8 378 59.3
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-112 410.2 377 59.2
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.9e-112 409.5 379 59.6
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 5.0e-112 408.7 387 59.4
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.5e-112 408.3 377 58.6
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-110 403.7 379 58.3
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.8e-109 400.2 379 57.8
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.8e-109 400.2 379 58.8
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.3e-109 399.8 387 56.6
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.8e-109 398.3 381 59.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.0e-108 396.7 374 59.6
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.6e-108 396.4 377 56.8
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 4.4e-108 395.6 380 56.6
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.5e-108 394.8 379 57.3
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 9.8e-108 394.4 379 59.1
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.3e-107 394.0 376 57.4
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.3e-107 394.0 368 57.9
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.8e-106 390.2 379 59.1
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.4e-106 389.8 375 57.3
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.1e-106 389.0 383 56.1
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 5.4e-106 388.7 384 57.8
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.7e-105 386.3 379 55.4
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.5e-105 385.6 420 53.6
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 7.7e-105 384.8 386 55.4
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.0e-104 384.4 379 55.4
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 3.8e-104 382.5 355 59.7
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 3.2e-103 379.4 363 58.7
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.1e-102 376.7 366 58.5
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 2.7e-102 376.3 378 55.8
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 6.1e-102 375.2 378 53.7
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.4e-101 374.0 329 62.6
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 2.3e-101 373.2 375 54.9
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 6.8e-101 371.7 382 52.6
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 2.0e-100 370.2 375 55.2
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.6e-100 369.8 386 54.1
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 3.4e-100 369.4 386 55.4
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 7.5e-100 368.2 331 60.4
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 7.5e-100 368.2 383 58.0
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.7e-99 367.1 385 54.5
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 2.2e-99 366.7 381 55.1
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.8e-99 366.3 386 54.7
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.8e-98 363.6 331 63.4
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.8e-98 363.6 383 53.8
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.4e-98 363.2 379 55.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 4.5e-97 359.0 388 54.1
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 5.9e-97 358.6 362 54.1
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.3e-96 357.5 383 52.7
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 8.6e-96 354.8 376 54.0
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 8.6e-96 354.8 378 54.8
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 9.5e-95 351.3 378 49.7
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 9.5e-95 351.3 376 52.4
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.2e-94 350.9 376 54.5
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.6e-94 350.5 383 53.0
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.6e-94 350.5 310 59.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 3.0e-93 346.3 334 55.1
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.6e-92 343.2 387 55.0
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 4.4e-92 342.4 378 47.6
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 7.5e-92 341.7 385 53.0
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 9.8e-92 341.3 385 52.5
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.3e-91 340.9 395 51.1
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.1e-90 337.8 385 51.4
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.8e-90 337.0 365 50.7
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.8e-90 337.0 378 48.4
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.8e-90 337.0 383 50.4
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 2.4e-90 336.7 385 51.4
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 5.4e-90 335.5 375 51.7
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 5.4e-90 335.5 381 48.8
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.2e-89 334.3 379 48.5
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.2e-89 334.3 379 48.5
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.6e-89 334.0 374 50.0
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.7e-89 333.2 378 47.6
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.0e-88 331.3 377 48.5
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 3.0e-88 329.7 378 49.5
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 8.6e-88 328.2 378 48.1
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 8.6e-88 328.2 377 48.3
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 9.5e-87 324.7 378 49.7
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.2e-86 324.3 378 47.6
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.6e-86 323.9 378 47.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-86 323.6 378 47.4
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 6.2e-86 322.0 376 48.7
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 8.0e-86 321.6 378 47.4
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 8.0e-86 321.6 378 47.6
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 8.0e-86 321.6 378 47.4
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-85 320.1 378 47.4
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 5.2e-85 318.9 360 50.8
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 9.8e-84 314.7 376 47.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 9.8e-84 314.7 376 47.3
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 9.8e-84 314.7 376 47.3
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 9.8e-84 314.7 385 45.5
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-83 313.9 361 48.2
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.9e-82 310.5 386 45.6
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 2.0e-81 307.0 378 46.8
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.7e-81 306.6 345 51.6
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 2.8e-78 296.6 379 46.7
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 1.1e-77 294.7 344 48.0
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.7e-75 287.3 360 47.2
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 2.0e-68 263.8 295 50.8
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.3e-67 261.2 331 45.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 2.2e-67 260.4 288 49.7
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 6.4e-67 258.8 354 43.5
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.1e-66 256.1 386 42.5
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 7.1e-66 255.4 381 41.7
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.1e-58 231.5 293 46.4
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.3e-56 224.6 334 40.4
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.4e-53 214.5 203 55.2
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 6.0e-41 172.6 131 73.3
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 5.3e-37 159.5 136 63.2
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.3e-32 144.1 142 50.7
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.1e-30 137.5 144 47.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.4e-29 134.8 157 47.8
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 3.1e-29 133.7 264 34.8
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.1e-29 133.3 136 50.0
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 5.3e-29 132.9 374 32.4
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.2e-28 131.7 386 32.1
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.9e-28 129.4 208 41.8
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 2.9e-27 127.1 259 34.4
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.0e-27 126.3 129 49.6
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 7.9e-25 119.0 107 54.2
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 3.1e-21 107.1 390 28.2
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 9.1e-21 105.5 89 61.8
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 9.1e-21 105.5 89 61.8
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.5e-20 104.8 128 43.0
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.5e-20 104.8 381 26.2
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 7.7e-20 102.4 384 25.5
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.6e-15 87.4 119 43.7
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 2.4e-13 80.9 82 47.6
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 3.1e-13 80.5 100 46.0
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 3.4e-12 77.0 69 56.5
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 2.2e-11 74.3 71 60.6
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 3.8e-11 73.6 71 60.6
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.4e-10 71.6 71 57.7
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 1.9e-10 71.2 59 62.7
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 3.6e-09 67.0 57 59.6
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 6.1e-09 66.2 61 59.0
Oeu051052.1 Olea europaea HOM05D002428 ORTHO05D005085 8.8e-08 62.4 71 54.9
HPP92_028133 Vanilla planifolia HOM05D002428 ORTHO05D005085 6.3e-06 56.2 145 31.7


User provided reference genes

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