Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.6e-127 458.4 248 100.0
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.7e-118 427.6 259 86.9
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.7e-110 401.0 262 87.4
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 6.8e-86 321.2 259 73.0
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 1.3e-81 307.0 262 71.4
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 4.3e-80 302.0 260 69.2
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 2.3e-73 279.6 261 64.4
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 8.6e-73 277.7 261 64.0
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 1.5e-72 276.9 261 63.2
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.5e-72 276.9 261 62.8
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 4.3e-72 275.4 259 65.6
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 7.3e-72 274.6 259 65.6
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.7e-71 271.9 246 64.6
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 8.1e-71 271.2 260 63.5
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 1.8e-70 270.0 267 61.8
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 5.2e-70 268.5 261 62.8
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 5.2e-70 268.5 268 61.6
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 6.8e-70 268.1 259 61.4
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 8.9e-70 267.7 249 63.5
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.5e-69 266.9 261 62.8
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 2.0e-69 266.5 265 63.8
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 2.0e-69 266.5 262 61.8
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.9e-69 264.2 248 63.3
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 9.9e-69 264.2 266 61.3
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 1.7e-68 263.5 260 61.2
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 8.3e-68 261.2 255 64.3
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 3.2e-67 259.2 251 63.7
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 7.1e-67 258.1 261 59.0
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 2.7e-66 256.1 252 63.1
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 2.7e-66 256.1 258 62.0
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 4.6e-66 255.4 257 63.0
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 6.0e-66 255.0 254 59.4
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 6.0e-66 255.0 256 60.2
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 3.0e-65 252.7 248 62.1
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 6.6e-65 251.5 247 61.5
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 6.6e-65 251.5 259 60.6
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 1.1e-64 250.8 267 57.3
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 1.5e-64 250.4 258 58.1
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.5e-64 250.4 248 61.7
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 3.3e-64 249.2 267 59.9
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 4.3e-64 248.8 266 58.3
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 5.6e-64 248.4 248 58.9
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 2.8e-63 246.1 258 57.8
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 3.6e-63 245.7 253 60.5
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 4.7e-63 245.4 243 58.0
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 1.1e-62 244.2 263 50.6
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 2.4e-62 243.0 251 59.4
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 2.4e-62 243.0 271 57.2
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 4.0e-62 242.3 242 58.7
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 4.0e-62 242.3 261 51.0
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 1.5e-61 240.4 249 55.4
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 2.2e-60 236.5 270 56.7
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 2.2e-60 236.5 257 60.3
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 2.9e-60 236.1 266 55.3
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 3.8e-60 235.7 280 54.6
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 8.4e-60 234.6 251 61.0
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 8.4e-60 234.6 250 58.8
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 2.4e-59 233.0 249 62.7
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 5.4e-59 231.9 253 58.1
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 7.1e-59 231.5 266 57.9
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 9.2e-59 231.1 253 58.1
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 1.6e-58 230.3 253 57.7
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.6e-58 230.3 240 60.4
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 3.5e-58 229.2 252 57.5
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.0e-57 227.6 239 59.4
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 1.7e-57 226.9 248 56.5
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.9e-57 225.7 154 80.5
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 5.1e-57 225.3 252 56.7
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 6.6e-57 224.9 254 56.7
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 8.7e-57 224.6 258 53.1
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 8.7e-57 224.6 264 51.1
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 1.1e-56 224.2 244 58.2
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 1.5e-56 223.8 245 54.3
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 1.9e-56 223.4 254 56.3
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 1.9e-56 223.4 254 56.3
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 3.3e-56 222.6 254 55.5
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 1.6e-55 220.3 249 57.0
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 2.1e-55 219.9 250 56.8
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 2.1e-55 219.9 221 63.8
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 3.6e-55 219.2 260 55.0
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 8.1e-55 218.0 226 56.6
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 8.1e-55 218.0 260 54.6
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.0e-54 215.7 149 81.9
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 6.4e-52 208.4 233 57.5
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 8.4e-52 208.0 257 53.7
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 8.4e-52 208.0 219 62.1
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.2e-51 206.1 150 72.0
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 2.7e-50 203.0 262 55.0
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 1.0e-49 201.1 220 55.9
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 1.3e-49 200.7 248 52.0
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 6.6e-49 198.4 191 60.7
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 9.6e-48 194.5 253 53.4
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 2.8e-47 193.0 250 53.2
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 8.1e-47 191.4 263 46.8
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 2.4e-46 189.9 243 51.4
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 2.4e-46 189.9 258 47.3
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 6.9e-46 188.3 206 57.8
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 7.6e-45 184.9 240 51.7
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 2.2e-44 183.3 257 42.8
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 4.9e-44 182.2 200 51.5
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 2.5e-40 169.9 184 53.8
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 3.3e-40 169.5 248 48.4
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 6.2e-39 165.2 249 42.2
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.5e-37 159.1 118 81.4
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.5e-37 159.1 118 81.4
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 1.0e-33 147.9 261 39.5
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 1.5e-32 144.1 158 54.4
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 1.9e-32 143.7 273 41.8
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 6.1e-26 122.1 210 43.3
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 7.4e-24 115.2 251 35.5
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 5.3e-22 109.0 248 36.3
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 7.7e-21 105.1 116 52.6
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 2.5e-19 100.1 158 39.2
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.5e-16 90.9 87 57.5
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 2.4e-14 83.6 126 42.1
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 1.9e-11 73.9 45 71.1
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 7.9e-10 68.6 335 27.5
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 3.9e-09 66.2 57 57.9


User provided reference genes

Program Settings