Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1281.2 700 100.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 5.3e-285 984.2 714 75.1
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.4e-282 976.1 721 74.3
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.1e-281 972.2 722 76.7
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 1.8e-280 969.1 725 74.2
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.4e-274 949.5 744 73.5
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 6.0e-273 944.1 717 71.5
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 4.8e-270 934.5 716 71.2
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 8.4e-267 923.7 718 70.9
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 7.2e-266 920.6 709 70.8
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.1e-263 913.3 712 69.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 7.4e-263 910.6 698 72.1
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 6.9e-261 904.0 717 69.9
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 9.0e-261 903.7 716 69.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 5.9e-260 901.0 705 70.9
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 7.7e-260 900.6 717 69.5
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 1.0e-259 900.2 718 69.5
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 1.3e-259 899.8 730 69.2
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 1.7e-259 899.4 722 68.8
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 2.2e-259 899.0 710 71.0
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.1e-258 896.7 716 68.7
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 3.2e-258 895.2 735 68.4
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 7.2e-258 894.0 723 69.6
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 9.4e-258 893.6 715 68.7
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 6.1e-257 891.0 714 70.0
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 3.9e-256 888.3 705 70.6
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.9e-256 888.3 724 68.2
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 1.5e-255 886.3 742 67.9
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 2.0e-255 885.9 757 65.4
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 7.4e-255 884.0 714 70.2
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 7.4e-255 884.0 718 68.8
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 7.4e-255 884.0 708 68.9
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 1.3e-254 883.2 716 68.7
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 1.3e-254 883.2 708 68.4
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.8e-254 882.1 704 69.0
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 3.7e-254 881.7 716 68.9
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 5.3e-253 877.9 708 67.1
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 9.1e-253 877.1 720 67.6
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 1.2e-252 876.7 718 68.2
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 1.5e-252 876.3 700 68.4
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 2.0e-252 875.9 705 68.9
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 2.6e-252 875.5 722 67.7
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 7.7e-252 874.0 713 68.3
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.3e-251 873.2 705 68.7
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 5.0e-251 871.3 728 68.5
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.0e-251 871.3 705 68.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 2.5e-250 869.0 717 66.8
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 3.2e-250 868.6 724 67.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 4.2e-250 868.2 714 68.3
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 5.5e-250 867.8 716 69.0
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 7.2e-250 867.5 708 68.8
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 1.6e-249 866.3 724 67.5
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 1.6e-249 866.3 710 67.5
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 2.1e-249 865.9 710 66.9
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.1e-249 865.9 704 67.8
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 4.7e-249 864.8 726 66.5
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.0e-248 863.6 714 67.2
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.3e-248 862.4 724 67.0
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 4.4e-247 858.2 705 67.7
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.7e-246 856.3 714 68.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 8.2e-246 854.0 724 67.7
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 3.1e-245 852.0 704 67.6
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 5.3e-245 851.3 717 67.4
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 1.2e-244 850.1 790 62.5
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 2.9e-243 845.5 709 65.4
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 5.0e-243 844.7 720 66.0
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 3.2e-242 842.0 711 65.7
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 7.2e-242 840.9 717 64.2
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.3e-240 835.9 713 64.7
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 3.0e-240 835.5 715 65.9
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.0e-240 835.1 715 65.3
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 5.2e-240 834.7 715 65.3
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.7e-240 834.3 722 65.4
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 6.7e-240 834.3 723 64.2
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 8.8e-240 833.9 717 65.1
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 8.8e-240 833.9 724 64.1
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.0e-239 832.8 713 64.7
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 5.7e-239 831.2 586 77.3
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 9.7e-239 830.5 709 66.9
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.4e-237 826.6 713 65.5
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.4e-237 826.6 717 64.7
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 3.5e-236 822.0 723 64.9
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 7.7e-236 820.8 718 64.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 8.5e-235 817.4 713 63.3
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 1.5e-234 816.6 715 63.8
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 1.5e-234 816.6 715 63.8
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 4.2e-234 815.1 714 64.8
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 7.2e-234 814.3 725 64.4
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 1.6e-233 813.1 721 63.8
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 4.7e-233 811.6 714 63.7
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 4.7e-233 811.6 714 63.7
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 4.7e-233 811.6 714 63.7
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 8.3e-230 800.8 546 78.0
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.7e-227 793.1 731 64.2
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.8e-227 792.0 717 64.6
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 8.5e-227 790.8 546 77.5
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.7e-225 785.0 546 77.3
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 6.8e-224 781.2 720 61.4
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.3e-216 756.1 720 60.1
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.4e-213 746.1 669 63.4
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.2e-213 745.7 714 61.6
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 4.1e-213 745.3 716 60.3
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.0e-212 743.0 645 66.8
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 4.3e-210 735.3 718 59.9
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 6.2e-209 731.5 713 59.2
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.3e-208 729.6 468 83.5
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 8.3e-206 721.1 714 59.1
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.1e-202 710.7 709 57.8
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.5e-202 710.3 733 55.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 3.1e-200 702.6 709 58.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.7e-198 696.8 710 58.3
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 6.8e-192 674.9 724 54.0
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.9e-187 659.1 703 55.6
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.6e-172 610.5 544 63.6
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.0e-150 538.1 710 46.6
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 2.2e-145 520.4 593 55.1
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.4e-144 516.9 518 58.7
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.1e-136 489.6 760 42.5
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 4.1e-136 489.6 760 42.5
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 2.0e-130 470.7 762 40.3
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.6e-127 460.3 382 65.4
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 9.4e-125 451.8 519 52.6
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.8e-123 445.3 756 40.5
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.6e-119 434.5 357 65.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.2e-114 418.3 545 47.5
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 2.2e-110 404.1 743 38.0
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 5.0e-110 402.9 409 57.5
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 2.0e-103 380.9 438 51.4
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 9.5e-85 318.9 213 80.3
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 4.0e-67 260.4 379 48.3
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.0e-66 258.1 305 51.8
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.9e-62 243.8 233 57.5
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 8.4e-49 199.5 342 40.1
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.2e-47 195.7 478 34.9
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 6.7e-46 189.9 544 31.1
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.1e-38 163.7 199 52.3
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 3.7e-36 157.5 117 72.6
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-29 135.6 112 68.8
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 4.1e-27 127.5 102 70.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-26 125.9 102 69.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-26 125.9 102 69.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.4e-26 124.4 123 60.2
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.0e-22 112.8 360 27.8
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 2.6e-21 108.2 274 33.2
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-19 102.8 108 54.6
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-19 102.8 118 44.1
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 9.1e-19 99.8 120 48.3
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 8.5e-17 93.2 54 88.9
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.1e-16 92.8 83 56.6
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.8e-14 85.5 75 68.0
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 2.6e-13 81.6 123 48.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.7e-13 79.7 130 39.2
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.8e-12 78.2 133 36.8
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 7.0e-11 73.6 52 63.5
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.2e-08 64.3 130 34.6
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 1.4e-06 59.3 34 82.4
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-06 58.9 60 51.7
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 5.2e-06 57.4 71 52.1


User provided reference genes

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