Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0050002 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 6.8e-129 464.2 258 100.0
CSS0011221 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 4.9e-71 271.9 189 84.1
CSS0014738 Camellia sinensis var. sinensis HOM05D006832 ORTHO05D008292 1.8e-60 236.9 177 79.7
Actinidia03616 Actinidia chinensis HOM05D006832 ORTHO05D008292 4.5e-32 142.5 208 46.2
Dinv15008 Davidia involucrata HOM05D006832 ORTHO05D008292 4.4e-27 125.9 238 43.7
Rhsim04G0036900 Rhododendron simsii HOM05D006832 ORTHO05D008292 5.7e-27 125.6 224 44.2
RhsimUnG0013300 Rhododendron simsii HOM05D006832 ORTHO05D008292 5.7e-27 125.6 224 44.2
Rhsim04G0036600 Rhododendron simsii HOM05D006832 ORTHO05D008292 4.1e-25 119.4 226 43.8
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 2.5e-22 110.2 199 44.2
vmacro09407 Vaccinium macrocarpon HOM05D006832 ORTHO05D008292 1.3e-18 97.8 219 39.3
GSVIVG01014166001 Vitis vinifera HOM05D006832 ORTHO05D008292 1.6e-16 90.9 201 39.8
Oeu021042.1 Olea europaea HOM05D006832 ORTHO05D008292 7.7e-16 88.6 223 37.2
PGSC0003DMG401021297 Solanum tuberosum HOM05D006832 ORTHO05D008292 5.0e-15 85.9 186 39.8
Solyc10g007440.3 Solanum lycopersicum HOM05D006832 ORTHO05D008292 1.5e-14 84.3 192 37.5
Cc05_g10910 Coffea canephora HOM05D006832 ORTHO05D008292 4.2e-14 82.8 208 37.5
Sopen10g003390 Solanum pennellii HOM05D006832 ORTHO05D008292 4.2e-14 82.8 192 38.0
Potri.001G376900 Populus trichocarpa HOM05D006832 ORTHO05D008292 1.2e-13 81.3 194 35.6
CAN.G904.32 Capsicum annuum HOM05D006832 ORTHO05D008292 1.0e-12 78.2 175 37.7
Sabra16G0248300 Salix brachista HOM05D006832 ORTHO05D008292 2.0e-11 73.9 204 33.3
PGSC0003DMG403021297 Solanum tuberosum HOM05D006832 ORTHO05D008292 5.7e-11 72.4 189 36.0
QL08p024452 Quercus lobata HOM05D006832 ORTHO05D008292 7.5e-11 72.0 199 36.7
Sopen10g003400 Solanum pennellii HOM05D006832 ORTHO05D008292 7.5e-11 72.0 189 38.1
Solyc10g007460.4 Solanum lycopersicum HOM05D006832 ORTHO05D008292 2.2e-10 70.5 189 37.6
MSTRG.6686 Avicennia marina HOM05D006832 ORTHO05D008292 8.3e-10 68.6 186 36.6
CARHR043680 Cardamine hirsuta HOM05D006832 ORTHO05D008292 1.8e-09 67.4 187 35.3
BraA08t32219Z Brassica rapa HOM05D006832 ORTHO05D008292 3.1e-09 66.6 166 38.6
CANSAT56G2937 Cannabis sativa HOM05D006832 ORTHO05D008292 9.1e-09 65.1 185 29.7
MD03G1246100 Malus domestica HOM05D006832 ORTHO05D008292 1.6e-08 64.3 197 32.0
Thhalv10011680m.g Eutrema salsugineum HOM05D006832 ORTHO05D008292 2.0e-08 63.9 191 37.2
Manes.15G097000 Manihot esculenta HOM05D006832 ORTHO05D008292 7.7e-08 62.0 194 31.4
BraA08t32210Z Brassica rapa HOM05D006832 ORTHO05D008292 2.2e-07 60.5 190 33.7
BcaB04g17079 Brassica carinata HOM05D006832 ORTHO05D008292 3.8e-07 59.7 199 34.2
Migut.M00714 Erythranthe guttata HOM05D006832 ORTHO05D008292 6.5e-07 58.9 192 33.3
A08p01560 Brassica napus HOM05D006832 ORTHO05D008292 1.5e-06 57.8 190 33.2
Thecc.07G123300 Theobroma cacao HOM05D006832 ORTHO05D008292 1.5e-06 57.8 174 32.8
Lalb_Chr25g0285711 Lupinus albus HOM05D006832 ORTHO05D008292 1.9e-06 57.4 199 32.7
TPR.G13159 Trifolium pratense HOM05D006832 ORTHO05D008292 2.5e-06 57.0 172 34.3
THA.LOC104810427 Tarenaya hassleriana HOM05D006832 ORTHO05D008292 3.2e-06 56.6 190 33.2
Psat5g234400 Pisum sativum HOM05D006832 ORTHO05D008292 7.2e-06 55.5 190 30.0
AL1G62020 Arabidopsis lyrata HOM05D006832 ORTHO05D008292 9.4e-06 55.1 199 35.2


User provided reference genes

Program Settings