Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 2052.7 1012 100.0
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 2036.5 1024 98.5
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1431.0 984 71.7
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1373.2 992 69.9
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 0.0e+00 1165.2 981 60.4
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1152.1 985 60.5
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 0.0e+00 1147.9 1000 58.4
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1142.9 996 59.2
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 0.0e+00 1120.5 978 60.1
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 0.0e+00 1105.9 986 56.4
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 0.0e+00 1102.8 976 57.3
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 0.0e+00 1096.6 1106 54.3
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 0.0e+00 1088.6 984 56.6
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 6.9e-312 1073.5 979 56.5
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 8.3e-311 1070.5 982 55.6
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 2.0e-309 1065.8 981 55.0
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 5.8e-309 1064.3 981 55.1
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.3e-308 1063.1 987 55.5
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 6.4e-308 1060.8 983 56.6
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.4e-307 1059.7 987 55.2
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.7e-306 1055.4 987 55.5
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 7.8e-306 1053.9 984 55.1
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 1.9e-304 1049.3 981 54.6
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 4.3e-304 1048.1 951 56.6
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.6e-303 1046.2 972 55.8
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 4.9e-292 1008.1 976 53.0
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 3.2e-291 1005.4 970 53.7
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.5e-288 996.5 978 53.2
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.4e-285 985.3 1003 52.2
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 5.8e-285 984.6 980 53.2
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 1.9e-283 979.5 953 53.5
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 2.4e-283 979.2 975 51.8
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 3.2e-283 978.8 975 52.6
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 1.3e-279 966.8 939 52.5
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 6.9e-278 961.1 841 56.1
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 1.2e-277 960.3 946 51.6
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 3.4e-277 958.7 866 57.4
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 1.1e-275 953.7 979 50.9
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.5e-272 943.3 978 50.4
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 1.9e-272 943.0 977 50.4
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 7.4e-272 941.0 995 50.6
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 2.4e-270 936.0 999 49.7
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 3.1e-270 935.6 982 48.9
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 5.3e-270 934.9 957 50.3
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 2.6e-269 932.6 979 49.6
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 1.3e-268 930.2 983 51.5
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 2.2e-268 929.5 977 49.4
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.4e-267 926.8 930 51.9
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.2e-267 925.6 992 49.2
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 3.6e-266 922.2 978 49.8
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 3.0e-265 919.1 982 49.2
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 6.7e-265 917.9 967 49.1
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.4e-262 910.2 978 49.1
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 2.2e-260 902.9 974 49.5
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 2.2e-260 902.9 991 48.3
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 1.4e-259 900.2 992 48.6
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 1.9e-259 899.8 995 47.7
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.4e-257 893.6 981 48.4
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 5.3e-254 881.7 981 46.3
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 3.2e-251 872.5 982 46.2
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.2e-250 870.5 984 46.0
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 3.6e-250 869.0 981 45.8
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 1.7e-247 860.1 751 56.9
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.7e-247 860.1 916 50.2
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 3.1e-246 855.9 988 45.6
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 5.3e-246 855.1 922 49.1
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 5.2e-241 838.6 981 45.5
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 6.7e-241 838.2 982 44.9
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 9.7e-240 834.3 981 44.9
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 7.0e-230 801.6 998 47.0
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.9e-227 793.5 775 53.3
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 4.9e-223 778.9 797 52.3
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.0e-220 771.2 974 44.8
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 7.0e-214 748.4 841 46.7
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 9.2e-214 748.0 957 42.0
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 1.5e-211 740.7 858 46.4
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 5.8e-208 728.8 982 42.2
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 6.6e-204 715.3 957 41.3
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 7.3e-203 711.8 746 48.7
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 3.3e-195 686.4 956 41.5
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 1.1e-193 681.4 749 47.8
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 4.0e-193 679.5 800 45.8
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 8.7e-180 635.2 549 57.9
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 6.4e-175 619.0 717 44.1
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 8.4e-175 618.6 730 44.1
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 4.2e-174 616.3 766 45.6
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 6.9e-169 599.0 964 37.2
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.5e-168 597.8 549 54.3
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 4.5e-144 516.5 747 40.8
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.0e-132 478.8 422 55.5
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 7.4e-131 472.6 854 34.8
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.8e-129 468.0 409 56.7
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.0e-100 372.5 375 52.8
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 2.4e-97 361.3 907 30.2
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.3e-94 350.5 431 47.3
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 6.4e-82 310.1 1015 26.1
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 2.8e-77 294.7 255 60.0
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 2.9e-74 284.6 473 37.4
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 3.8e-66 257.7 197 57.4
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.9e-65 255.4 566 28.4
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 1.4e-60 239.2 406 35.7
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.8e-60 238.8 193 59.1
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 5.3e-60 237.3 286 37.8
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 2.9e-58 231.5 438 34.7
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 3.9e-55 221.1 235 49.4
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.6e-51 208.4 210 53.3
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 4.6e-48 197.6 213 47.9
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 7.9e-48 196.8 193 53.4
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.3e-46 191.4 176 53.4
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 4.3e-46 191.0 145 65.5
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 9.0e-44 183.3 144 60.4
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.8e-39 169.1 158 53.2
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 8.2e-37 160.2 118 61.9
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 9.4e-33 146.7 148 52.0
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.6e-32 144.8 148 51.4
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 3.6e-32 144.8 269 33.5
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 2.3e-31 142.1 112 58.9
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 7.7e-27 127.1 155 42.6
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 6.1e-24 117.5 76 67.1
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.1e-22 113.2 172 41.3
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 9.4e-17 93.6 155 35.5
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.1e-12 80.1 80 45.0
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 3.1e-12 78.6 124 40.3
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 7.0e-12 77.4 64 60.9
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 5.9e-11 74.3 47 68.1
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 1.0e-07 63.5 125 32.8
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 5.2e-07 61.2 125 31.2


User provided reference genes

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