Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049970 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 0.0e+00 1245.7 687 100.0
CSS0002282 Camellia sinensis var. sinensis HOM05D006530 ORTHO05D008283 0.0e+00 1224.2 681 99.3
Rhsim06G0169800 Rhododendron simsii HOM05D006530 ORTHO05D008283 1.5e-239 833.2 681 68.7
Hma1.2p1_0445F.1_g154110 Hydrangea macrophylla HOM05D006530 ORTHO05D008283 1.1e-221 773.9 681 64.8
Haze_12746 Corylus avellana HOM05D006530 ORTHO05D008283 4.9e-219 765.0 679 63.3
Atru.chr6.3278 Acer truncatum HOM05D006530 ORTHO05D008283 6.4e-219 764.6 689 62.0
Atru.chr6.3294 Acer truncatum HOM05D006530 ORTHO05D008283 1.9e-218 763.1 688 61.9
Thecc.01G184900 Theobroma cacao HOM05D006530 ORTHO05D008283 9.6e-215 750.7 686 58.7
Duzib133G1057 Durio zibethinus HOM05D006530 ORTHO05D008283 4.0e-213 745.3 678 59.0
Cfa014298 Carpinus fangiana HOM05D006530 ORTHO05D008283 1.0e-211 740.7 679 62.0
QL08p029933 Quercus lobata HOM05D006530 ORTHO05D008283 1.3e-211 740.3 723 60.6
Ciclev10014523m.g Citrus clementina HOM05D006530 ORTHO05D008283 3.8e-211 738.8 694 60.7
COL.COLO4_32787 Corchorus olitorius HOM05D006530 ORTHO05D008283 9.3e-210 734.2 683 58.9
Gorai.001G218200 Gossypium raimondii HOM05D006530 ORTHO05D008283 2.5e-207 726.1 683 58.9
Actinidia09758 Actinidia chinensis HOM05D006530 ORTHO05D008283 2.4e-205 719.5 717 61.2
vmacro12144 Vaccinium macrocarpon HOM05D006530 ORTHO05D008283 2.6e-204 716.1 814 54.7
Prupe.3G206900 Prunus persica HOM05D006530 ORTHO05D008283 4.5e-204 715.3 706 59.2
Gohir.A07G188400 Gossypium hirsutum HOM05D006530 ORTHO05D008283 4.2e-202 708.8 676 58.1
MD09G1117000 Malus domestica HOM05D006530 ORTHO05D008283 2.1e-201 706.4 697 59.1
Dinv08706 Davidia involucrata HOM05D006530 ORTHO05D008283 7.9e-201 704.5 635 64.9
Gohir.D07G195000 Gossypium hirsutum HOM05D006530 ORTHO05D008283 8.7e-200 701.0 683 57.7
TAR624G0329 Trochodendron aralioides HOM05D006530 ORTHO05D008283 2.2e-198 696.4 737 56.4
FvH4_6g41820 Fragaria vesca HOM05D006530 ORTHO05D008283 4.8e-198 695.3 680 57.4
RcHm_v2.0_Chr2g0157621 Rosa chinensis HOM05D006530 ORTHO05D008283 1.3e-195 687.2 680 58.8
TWI18G1412 Tripterygium wilfordii HOM05D006530 ORTHO05D008283 1.7e-195 686.8 669 57.8
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 9.4e-194 681.0 686 57.3
FAN09G3579 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.6e-193 680.2 681 57.4
Lj1A785T50 Lonicera japonica HOM05D006530 ORTHO05D008283 3.3e-191 672.5 719 57.7
Manes.12G056700 Manihot esculenta HOM05D006530 ORTHO05D008283 3.1e-189 666.0 802 50.5
Aqoxy1G02869 Aquilegia oxysepala HOM05D006530 ORTHO05D008283 2.0e-188 663.3 693 54.5
Sabra14G0122100 Salix brachista HOM05D006530 ORTHO05D008283 2.6e-188 662.9 696 55.9
Cpa.g.sc132.47 Carica papaya HOM05D006530 ORTHO05D008283 1.3e-187 660.6 657 56.8
Nn1g03345 Nelumbo nucifera HOM05D006530 ORTHO05D008283 6.5e-187 658.3 709 55.9
CANSAT64G1714 Cannabis sativa HOM05D006530 ORTHO05D008283 8.5e-187 657.9 684 59.6
Eucgr.K00730 Eucalyptus grandis HOM05D006530 ORTHO05D008283 3.2e-186 656.0 693 54.1
PGR142G2443 Punica granatum HOM05D006530 ORTHO05D008283 2.7e-185 652.9 794 49.9
GSVIVG01030533001 Vitis vinifera HOM05D006530 ORTHO05D008283 7.9e-185 651.4 648 59.3
DCAR_019250 Daucus carota HOM05D006530 ORTHO05D008283 1.4e-184 650.6 692 55.8
PSO541G4152 Papaver somniferum HOM05D006530 ORTHO05D008283 1.0e-179 634.4 703 52.6
MELO3C019717.2 Cucumis melo HOM05D006530 ORTHO05D008283 1.7e-179 633.6 704 54.0
CsaV3_6G015570 Cucumis sativus L. HOM05D006530 ORTHO05D008283 1.1e-178 630.9 705 53.2
Lalb_Chr08g0236491 Lupinus albus HOM05D006530 ORTHO05D008283 4.2e-178 629.0 678 52.8
Glyma.20G058500 Glycine max HOM05D006530 ORTHO05D008283 9.4e-178 627.9 674 52.7
Medtr3g082840 Medicago truncatula HOM05D006530 ORTHO05D008283 7.4e-175 618.2 673 53.0
THA.LOC104808864 Tarenaya hassleriana HOM05D006530 ORTHO05D008283 2.2e-174 616.7 685 52.0
FAN14G2540 Fragaria x ananassa HOM05D006530 ORTHO05D008283 8.2e-174 614.8 680 53.4
Cc05_g02470 Coffea canephora HOM05D006530 ORTHO05D008283 1.1e-173 614.4 692 52.9
Ca_16350_v3 Cicer arietinum L. HOM05D006530 ORTHO05D008283 2.0e-172 610.1 673 52.5
Psat5g104000 Pisum sativum HOM05D006530 ORTHO05D008283 2.0e-172 610.1 674 51.3
ECA236G0541 Erigeron canadensis HOM05D006530 ORTHO05D008283 1.7e-171 607.1 691 54.1
arahy.Tifrunner.gnm1.ann1.KP8KK1 Arachis hypogaea HOM05D006530 ORTHO05D008283 6.5e-171 605.1 674 51.2
arahy.Tifrunner.gnm1.ann1.B2HSRW Arachis hypogaea HOM05D006530 ORTHO05D008283 7.2e-170 601.7 673 51.9
Nitab4.5_0000622g0140 Nicotiana tabacum HOM05D006530 ORTHO05D008283 2.1e-169 600.1 688 51.5
CiPaw.03G274100 Carya illinoinensis HOM05D006530 ORTHO05D008283 1.0e-168 597.8 611 54.8
Phvul.006G013400 Phaseolus vulgaris HOM05D006530 ORTHO05D008283 4.0e-168 595.9 679 50.8
PGSC0003DMG400013890 Solanum tuberosum HOM05D006530 ORTHO05D008283 6.8e-168 595.1 689 52.8
Hund24188 Selenicereus undatus HOM05D006530 ORTHO05D008283 1.2e-167 594.3 686 50.9
Sopen12g001950 Solanum pennellii HOM05D006530 ORTHO05D008283 3.4e-167 592.8 679 52.0
VMungo0540G0580 Vigna mungo HOM05D006530 ORTHO05D008283 4.4e-167 592.4 678 50.7
AUR62015107 Chenopodium quinoa HOM05D006530 ORTHO05D008283 7.5e-167 591.7 686 52.2
MSTRG.14123 Avicennia marina HOM05D006530 ORTHO05D008283 9.8e-167 591.3 665 52.3
AUR62017570 Chenopodium quinoa HOM05D006530 ORTHO05D008283 8.3e-166 588.2 680 52.8
EL10Ac9g22807 Beta vulgaris HOM05D006530 ORTHO05D008283 2.7e-164 583.2 713 49.5
Solyc12g005980.2 Solanum lycopersicum HOM05D006530 ORTHO05D008283 2.7e-164 583.2 690 52.2
Peaxi162Scf00047g02037 Petunia axillaris HOM05D006530 ORTHO05D008283 6.5e-163 578.6 692 52.0
HanXRQChr16g0508331 Helianthus annuus HOM05D006530 ORTHO05D008283 8.5e-163 578.2 678 54.6
AT5G35690 Arabidopsis thaliana HOM05D006530 ORTHO05D008283 1.5e-162 577.4 676 49.6
CAN.G931.8 Capsicum annuum HOM05D006530 ORTHO05D008283 3.2e-162 576.2 688 51.3
Lj6g0023666 Lotus japonicus HOM05D006530 ORTHO05D008283 2.7e-161 573.2 680 50.0
Migut.H01255 Erythranthe guttata HOM05D006530 ORTHO05D008283 3.6e-161 572.8 678 49.7
Sed0022132 Sechium edule HOM05D006530 ORTHO05D008283 6.1e-161 572.0 837 45.9
SalBow3G0397 Salvia bowleyana HOM05D006530 ORTHO05D008283 1.0e-160 571.2 686 50.1
Os08g0500800 Oryza sativa ssp. japonica HOM05D006530 ORTHO05D008283 1.4e-160 570.9 704 51.1
Aa31sc124G40 Aethionema arabicum HOM05D006530 ORTHO05D008283 2.3e-160 570.1 679 49.2
Carub.0007s3142 Capsella rubella HOM05D006530 ORTHO05D008283 5.7e-159 565.5 676 48.1
AL7G44540 Arabidopsis lyrata HOM05D006530 ORTHO05D008283 1.4e-157 560.8 678 48.4
Nitab4.5_0005875g0040 Nicotiana tabacum HOM05D006530 ORTHO05D008283 4.1e-157 559.3 674 50.0
Sp7g06570 Schrenkiella parvula HOM05D006530 ORTHO05D008283 1.2e-156 557.8 686 48.5
SalBow1G8616 Salvia bowleyana HOM05D006530 ORTHO05D008283 1.0e-155 554.7 725 47.0
Thhalv10003827m.g Eutrema salsugineum HOM05D006530 ORTHO05D008283 1.5e-154 550.8 678 48.7
Oeu061995.2 Olea europaea HOM05D006530 ORTHO05D008283 1.4e-152 544.3 796 43.6
Zm00001eb034180 Zea mays HOM05D006530 ORTHO05D008283 4.0e-152 542.7 676 47.5
CARHR217000 Cardamine hirsuta HOM05D006530 ORTHO05D008283 3.7e-150 536.2 676 47.5
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 4.1e-149 532.7 670 48.5
C04p43360 Brassica napus HOM05D006530 ORTHO05D008283 7.0e-149 531.9 670 48.5
BolC4t25914H Brassica oleracea HOM05D006530 ORTHO05D008283 4.6e-148 529.3 670 48.2
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 1.5e-146 524.2 669 46.3
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 1.5e-146 524.2 669 46.3
CDE10G0969 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 2.8e-145 520.0 762 44.0
Lsat_1_v5_gn_7_94721 Lactuca sativa HOM05D006530 ORTHO05D008283 1.0e-144 518.1 675 49.8
ATR1128G020 Amborella trichopoda HOM05D006530 ORTHO05D008283 1.6e-140 504.2 804 45.4
BcaB06g26968 Brassica carinata HOM05D006530 ORTHO05D008283 1.3e-139 501.1 670 46.0
unitig_26.g9922 Utricularia gibba HOM05D006530 ORTHO05D008283 2.1e-137 493.8 664 44.7
FAN02G4367 Fragaria x ananassa HOM05D006530 ORTHO05D008283 4.0e-136 489.6 381 66.4
HPP92_018405 Vanilla planifolia HOM05D006530 ORTHO05D008283 4.1e-133 479.6 687 45.1
Sc20g0005070 Simmondsia chinensis HOM05D006530 ORTHO05D008283 2.5e-130 470.3 634 46.7
CDE10G0956 Ceratophyllum demersum HOM05D006530 ORTHO05D008283 6.2e-113 412.5 789 37.4
Pp3c20_8530 Physcomitrium patens HOM05D006530 ORTHO05D008283 5.4e-109 399.4 704 38.9
SEGI_28144 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 8.1e-105 385.6 338 58.9
ATR1001G009 Amborella trichopoda HOM05D006530 ORTHO05D008283 6.9e-104 382.5 347 56.8
SGA_v2.0_scaffold49G18363 Striga asiatica HOM05D006530 ORTHO05D008283 4.9e-94 349.7 680 37.4
AagrBONN_evm.TU.Sc2ySwM_228.92 Anthoceros agrestis HOM05D006530 ORTHO05D008283 1.1e-93 348.6 730 39.2
BcaB06g26965 Brassica carinata HOM05D006530 ORTHO05D008283 2.5e-93 347.4 570 41.2
Mapoly0071s0087 Marchantia polymorpha HOM05D006530 ORTHO05D008283 6.3e-81 306.2 415 45.3
TPR.G7490 Trifolium pratense HOM05D006530 ORTHO05D008283 8.2e-81 305.8 469 44.6
TPR.G22470 Trifolium pratense HOM05D006530 ORTHO05D008283 7.7e-79 299.3 198 72.2
ClCG02G018190 Citrullus lanatus HOM05D006530 ORTHO05D008283 3.1e-72 277.3 690 35.4
MD17G1108500 Malus domestica HOM05D006530 ORTHO05D008283 2.2e-65 254.6 678 32.9
FAN03G2558 Fragaria x ananassa HOM05D006530 ORTHO05D008283 2.4e-48 198.0 146 67.1
MCO07G103 Micromonas commoda HOM05D006530 ORTHO05D008283 2.3e-43 181.4 316 37.0
Cre16.g684000 Chlamydomonas reinhardtii HOM05D006530 ORTHO05D008283 4.5e-39 167.2 318 33.6
FAN15G1469 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.1e-37 162.5 118 67.8
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.1e-37 162.5 118 67.8
FAN27G2805 Fragaria x ananassa HOM05D006530 ORTHO05D008283 1.1e-37 162.5 118 67.8
SEGI_11846 Sequoiadendron giganteum HOM05D006530 ORTHO05D008283 1.1e-32 146.0 120 54.2
Cfa025683 Carpinus fangiana HOM05D006530 ORTHO05D008283 1.6e-20 105.5 287 29.6
BcaB06g26964 Brassica carinata HOM05D006530 ORTHO05D008283 6.8e-19 100.1 81 58.0
SGA_v2.0_scaffold112G31585 Striga asiatica HOM05D006530 ORTHO05D008283 4.1e-16 90.9 70 60.0
SHI10239 Sapria himalayana HOM05D006530 ORTHO05D008283 1.5e-13 82.4 100 46.0
Lj6g0015704 Lotus japonicus HOM05D003423 ORTHO05D003910 4.0e-11 74.3 170 32.4
FvH4_3g29470 Fragaria vesca HOM05D003423 ORTHO05D003910 1.2e-10 72.8 166 32.5
SGA_v2.0_scaffold42G16002 Striga asiatica HOM05D003423 ORTHO05D003910 2.0e-10 72.0 182 29.1
RcHm_v2.0_Chr5g0054021 Rosa chinensis HOM05D003423 ORTHO05D003910 2.6e-10 71.6 166 31.9
MD11G1201700 Malus domestica HOM05D003423 ORTHO05D003910 4.4e-10 70.9 166 31.9
SMO361G0751 Selaginella moellendorffii HOM05D003423 ORTHO05D003910 1.3e-09 69.3 184 30.4
Hund01908 Selenicereus undatus HOM05D003423 ORTHO05D003910 1.3e-09 69.3 174 30.5
TWI39G0701 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 2.2e-09 68.6 113 35.4
ATR0580G345 Amborella trichopoda HOM05D003423 ORTHO05D003910 2.9e-09 68.2 187 31.6
EL10Ac4g07604 Beta vulgaris HOM05D003423 ORTHO05D003910 2.9e-09 68.2 177 29.4
Eucgr.F02068 Eucalyptus grandis HOM05D003423 ORTHO05D003910 3.8e-09 67.8 177 28.8
CDE04G0040 Ceratophyllum demersum HOM05D003423 ORTHO05D003910 4.9e-09 67.4 105 39.0
FAN25G2240 Fragaria x ananassa HOM05D003423 ORTHO05D003910 8.4e-09 66.6 167 32.3
Prupe.4G239900 Prunus persica HOM05D003423 ORTHO05D003910 8.4e-09 66.6 167 31.1
FAN11G0659 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.4e-08 65.9 166 30.7
FAN21G0447 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.4e-08 65.9 166 30.7
PSO782G1032 Papaver somniferum HOM05D003423 ORTHO05D003910 1.4e-08 65.9 120 31.7
HanXRQChr11g0333391 Helianthus annuus HOM05D003423 ORTHO05D003910 1.9e-08 65.5 192 30.7
MBI19_g29441_MAGBIO Magnolia biondii HOM05D006530 ORTHO05D008283 1.9e-08 65.5 327 29.1
Medtr3g058580 Medicago truncatula HOM05D003423 ORTHO05D003910 1.9e-08 65.5 170 29.4
PSO063G5220 Papaver somniferum HOM05D003423 ORTHO05D003910 1.9e-08 65.5 121 33.1
Potri.011G092900 Populus trichocarpa HOM05D003423 ORTHO05D003910 1.9e-08 65.5 172 29.1
TAR624G0752 Trochodendron aralioides HOM05D003423 ORTHO05D003910 1.9e-08 65.5 109 35.8
Lj1A888G39 Lonicera japonica HOM05D003423 ORTHO05D003910 3.2e-08 64.7 180 29.4
Cfa022425 Carpinus fangiana HOM05D003423 ORTHO05D003910 4.1e-08 64.3 121 33.9
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 4.1e-08 64.3 168 30.4
AagrBONN_evm.TU.Sc2ySwM_228.5488 Anthoceros agrestis HOM05D003423 ORTHO05D003910 5.4e-08 63.9 92 40.2
Oeu041432.1 Olea europaea HOM05D003423 ORTHO05D003910 5.4e-08 63.9 177 29.4
CBR_g12763 Chara braunii HOM05D003423 ORTHO05D003910 7.1e-08 63.5 93 38.7
SEGI_36313 Sequoiadendron giganteum HOM05D003423 ORTHO05D003910 9.2e-08 63.2 99 38.4
Aqoxy6G02866 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 1.2e-07 62.8 170 30.0
HanXRQChr09g0277351 Helianthus annuus HOM05D003423 ORTHO05D003910 1.6e-07 62.4 150 31.3
Sed0010386 Sechium edule HOM05D003423 ORTHO05D003910 1.6e-07 62.4 149 31.5
Eucgr.F03997 Eucalyptus grandis HOM05D003423 ORTHO05D003910 2.1e-07 62.0 92 39.1
Lj9A540T81 Lonicera japonica HOM05D003423 ORTHO05D003910 2.1e-07 62.0 92 40.2
Oeu051387.2 Olea europaea HOM05D003423 ORTHO05D003910 2.7e-07 61.6 92 39.1
Os06g0191200 Oryza sativa ssp. japonica HOM05D003423 ORTHO05D003910 2.7e-07 61.6 174 30.5
PRCOL_00000756 Prasinoderma coloniale HOM05D003423 ORTHO05D003910 2.7e-07 61.6 124 32.3
Pp3c5_3280 Physcomitrium patens HOM05D003423 ORTHO05D003910 3.5e-07 61.2 171 30.4
A03p41860 Brassica napus HOM05D003344 ORTHO05D003981 4.6e-07 60.8 86 44.2
ClCG04G000610 Citrullus lanatus HOM05D003423 ORTHO05D003910 7.8e-07 60.1 92 37.0
Nn3g19300 Nelumbo nucifera HOM05D003423 ORTHO05D003910 1.0e-06 59.7 148 30.4
HPP92_018337 Vanilla planifolia HOM05D003423 ORTHO05D003910 1.0e-06 59.7 183 27.3
MELO3C009034.2 Cucumis melo HOM05D003423 ORTHO05D003910 1.3e-06 59.3 165 30.9
SHI10236 Sapria himalayana HOM05D006530 ORTHO05D008283 2.3e-06 58.5 72 44.4


User provided reference genes

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