Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-47 193.0 96 100.0
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.2e-44 180.3 96 95.8
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-31 139.8 97 74.2
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.2e-30 136.3 96 69.8
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.6e-29 130.2 95 69.5
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.6e-29 130.2 95 69.5
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 9.5e-28 126.7 97 73.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.2e-26 120.9 99 70.7
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.4e-25 117.9 97 60.8
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.7e-24 114.8 98 68.4
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.2e-23 110.2 97 58.8
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.0e-22 107.5 96 61.5
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 8.6e-21 103.6 96 52.1
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.1e-20 103.2 98 56.1
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.5e-20 102.8 95 49.5
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.9e-20 102.4 96 54.2
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.9e-20 102.4 96 56.2
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.5e-20 102.1 97 54.6
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.5e-20 102.1 98 57.1
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.8e-19 98.6 96 53.1
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 6.2e-19 97.4 96 54.2
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.1e-18 96.7 97 51.5
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.4e-18 96.3 96 57.3
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.0e-18 94.7 86 57.0
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 4.0e-18 94.7 96 51.0
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 5.2e-18 94.4 96 52.1
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 6.8e-18 94.0 94 53.2
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.8e-18 94.0 96 49.0
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.8e-18 94.0 97 53.6
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-17 93.2 96 49.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.5e-17 92.8 96 49.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.0e-17 92.4 67 70.1
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.6e-17 92.0 95 53.7
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 4.4e-17 91.3 96 51.0
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.4e-17 91.3 96 49.0
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 5.8e-17 90.9 96 47.9
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 7.6e-17 90.5 95 52.6
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 7.6e-17 90.5 96 47.9
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 7.6e-17 90.5 97 50.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.9e-17 90.1 96 47.9
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.7e-16 89.4 97 49.5
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.2e-16 89.0 96 49.0
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.2e-16 89.0 63 71.4
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.9e-16 88.6 97 52.6
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.9e-16 88.6 64 71.9
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 8.3e-16 87.0 96 51.0
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 8.3e-16 87.0 96 47.9
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.4e-15 86.3 98 46.9
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.4e-15 86.3 96 47.9
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.9e-15 85.9 96 45.8
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.9e-15 85.9 88 52.3
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-15 85.5 96 51.0
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 4.1e-15 84.7 96 49.0
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 7.1e-15 84.0 108 47.2
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 7.1e-15 84.0 94 48.9
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 7.1e-15 84.0 94 48.9
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.1e-15 84.0 98 45.9
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 7.1e-15 84.0 96 50.0
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.2e-15 83.6 96 45.8
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.2e-15 83.6 96 50.0
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 9.2e-15 83.6 104 49.0
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-14 83.2 96 49.0
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.6e-14 82.8 96 45.8
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.6e-14 82.8 104 49.0
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.6e-14 82.8 93 49.5
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 2.1e-14 82.4 91 50.5
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 2.7e-14 82.0 96 47.9
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 3.5e-14 81.6 95 50.5
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 3.5e-14 81.6 99 49.5
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.6e-14 81.3 95 46.3
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.6e-14 81.3 96 50.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 7.8e-14 80.5 96 46.9
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 7.8e-14 80.5 95 44.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.0e-13 80.1 95 51.6
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 1.0e-13 80.1 89 49.4
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.3e-13 79.7 96 44.8
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-13 79.3 98 45.9
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.3e-13 79.0 94 51.1
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 2.3e-13 79.0 98 46.9
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 3.0e-13 78.6 96 45.8
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.0e-13 78.6 97 47.4
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 3.9e-13 78.2 96 46.9
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 3.9e-13 78.2 96 45.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 3.9e-13 78.2 94 46.8
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.9e-13 78.2 95 43.2
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.1e-13 77.8 94 53.2
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 5.1e-13 77.8 99 45.5
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 6.6e-13 77.4 96 46.9
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 6.6e-13 77.4 97 43.3
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 6.6e-13 77.4 50 70.0
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 6.6e-13 77.4 95 46.3
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 8.6e-13 77.0 96 53.1
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.1e-12 76.6 49 69.4
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.5e-12 76.3 94 45.7
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-12 76.3 89 47.2
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.5e-12 76.3 98 45.9
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.9e-12 75.9 100 47.0
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.5e-12 75.5 99 44.4
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.5e-12 75.5 96 45.8
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.5e-12 75.5 96 50.0
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.3e-12 74.7 62 62.9
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.6e-12 74.3 97 45.4
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 9.6e-12 73.6 86 47.7
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.2e-11 73.2 89 46.1
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.6e-11 72.8 85 42.4
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.6e-11 72.8 85 42.4
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.6e-11 72.8 99 47.5
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.1e-11 72.4 97 45.4
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.6e-11 71.6 99 48.5
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.7e-11 71.2 104 47.1
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 4.7e-11 71.2 104 47.1
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 4.7e-11 71.2 94 38.3
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 4.7e-11 71.2 69 52.2
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 4.7e-11 71.2 59 57.6
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 8.1e-11 70.5 100 42.0
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.1e-11 70.5 63 55.6
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.1e-10 70.1 97 48.5
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.4e-10 69.7 105 44.8
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 1.4e-10 69.7 98 43.9
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 1.4e-10 69.7 83 48.2
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 97 43.3
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.8e-10 69.3 96 45.8
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.8e-10 69.3 99 47.5
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 3.1e-10 68.6 82 42.7
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.1e-10 68.6 96 40.6
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.0e-10 68.2 89 41.6
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 4.0e-10 68.2 95 45.3
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.0e-10 68.2 95 45.3
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.0e-10 68.2 97 45.4
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.0e-10 68.2 97 43.3
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 5.2e-10 67.8 104 48.1
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 5.2e-10 67.8 80 47.5
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 6.8e-10 67.4 94 46.8
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 6.8e-10 67.4 97 45.4
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 6.8e-10 67.4 96 41.7
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.5e-09 66.2 99 44.4
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.5e-09 66.2 99 45.5
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 2.0e-09 65.9 94 40.4
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.0e-09 65.9 96 44.8
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-09 65.5 41 70.7
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-09 65.5 96 42.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-09 65.5 96 42.7
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 2.6e-09 65.5 85 40.0
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 2.6e-09 65.5 94 39.4
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.4e-09 65.1 53 54.7
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 4.4e-09 64.7 90 43.3
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 5.8e-09 64.3 98 46.9
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.6e-09 63.9 97 39.2
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 9.9e-09 63.5 93 44.1
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.9e-09 63.5 40 65.0
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 9.9e-09 63.5 97 42.3
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 9.9e-09 63.5 96 39.6
Dinv12522 Davidia involucrata HOM05D003745 ORTHO05D004215 1.3e-08 63.2 59 61.0
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.7e-08 62.8 55 58.2
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 2.9e-08 62.0 97 41.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.9e-08 62.0 95 44.2
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.8e-08 61.6 87 35.6
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 6.4e-08 60.8 106 40.6
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 6.4e-08 60.8 103 39.8
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.9e-07 59.3 97 39.2
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 1.9e-07 59.3 79 40.5
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 2.4e-07 58.9 99 37.4
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 3.2e-07 58.5 85 41.2
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 4.2e-07 58.2 39 61.5
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 4.2e-07 58.2 102 38.2
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 4.2e-07 58.2 97 36.1
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.4e-07 57.8 44 56.8
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.4e-07 57.8 94 44.7
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 7.1e-07 57.4 92 39.1
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-06 56.6 40 65.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.2e-06 56.6 40 65.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 97 38.1
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.6e-06 56.2 87 41.4
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.1e-06 55.8 47 55.3
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.1e-06 55.8 92 39.1
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 4.6e-06 54.7 100 36.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 4.6e-06 54.7 100 36.0
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 7.8e-06 53.9 35 68.6
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.8e-06 53.9 37 62.2
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 7.8e-06 53.9 92 38.0


User provided reference genes

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