Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049937 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 4.4e-62 241.1 123 100.0
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.9e-44 182.6 127 78.7
CSS0049796 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.2e-43 179.9 124 79.0
CSS0029567 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 3.0e-42 175.3 126 77.8
CSS0045169 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 3.0e-42 175.3 126 77.8
CSS0030372 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.9e-36 156.0 135 68.9
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 3.2e-36 155.2 127 65.4
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 1.1e-33 146.7 119 66.4
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 2.5e-33 145.6 126 61.9
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 1.4e-28 129.8 122 59.0
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 1.9e-28 129.4 120 60.0
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 4.2e-28 128.3 121 55.4
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 4.2e-28 128.3 121 55.4
Nitab4.5_0000165g0050 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.6e-27 126.3 77 74.0
Nitab4.5_0001354g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 6.0e-27 124.4 76 73.7
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 1.8e-26 122.9 121 57.0
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 1.3e-24 116.7 118 53.4
Peaxi162Scf00824g00113 Petunia axillaris HOM05D002350 ORTHO05D000091 2.8e-24 115.5 117 52.1
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 8.2e-24 114.0 84 63.1
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 8.2e-24 114.0 126 48.4
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 5.3e-23 111.3 90 63.3
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 5.3e-23 111.3 120 52.5
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 5.3e-23 111.3 79 62.0
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 1.2e-22 110.2 122 53.3
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 5.9e-22 107.8 93 60.2
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 7.6e-22 107.5 121 48.8
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 1.0e-21 107.1 121 52.1
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 2.9e-21 105.5 124 43.5
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 2.9e-21 105.5 123 52.8
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 3.8e-21 105.1 82 62.2
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 3.8e-21 105.1 111 55.9
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 5.0e-21 104.8 126 46.8
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 8.5e-21 104.0 121 51.2
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 8.5e-21 104.0 78 64.1
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 1.4e-20 103.2 111 54.1
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 1.9e-20 102.8 122 50.8
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.9e-20 102.8 72 68.1
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.9e-20 102.8 72 68.1
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 2.5e-20 102.4 121 52.1
PGSC0003DMG402000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 5.5e-20 101.3 111 53.2
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 7.2e-20 100.9 135 48.1
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 7.2e-20 100.9 80 60.0
HanXRQChr16g0503801 Helianthus annuus HOM05D002350 ORTHO05D000091 1.2e-19 100.1 122 47.5
CAN.G160.38 Capsicum annuum HOM05D002350 ORTHO05D000091 1.6e-19 99.8 109 56.0
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 1.6e-19 99.8 118 46.6
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 2.7e-19 99.0 119 44.5
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 2.7e-19 99.0 116 50.0
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 3.6e-19 98.6 122 45.1
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 1.4e-18 96.7 118 45.8
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 1.4e-18 96.7 122 45.1
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 1.4e-18 96.7 67 70.1
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 8.8e-18 94.0 111 49.5
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 1.5e-17 93.2 118 44.9
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 2.5e-17 92.4 112 49.1
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 5.7e-17 91.3 80 53.8
DCAR_018379 Daucus carota HOM05D002350 ORTHO05D000091 9.7e-17 90.5 123 46.3
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 1.3e-16 90.1 77 58.4
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 1.3e-16 90.1 92 52.2
C07p01730 Brassica napus HOM05D002350 ORTHO05D000091 2.2e-16 89.4 89 49.4
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 3.7e-16 88.6 76 57.9
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 3.7e-16 88.6 119 50.4
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 3.7e-16 88.6 125 43.2
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 8.2e-16 87.4 118 43.2
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 8.2e-16 87.4 84 51.2
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 8.2e-16 87.4 134 40.3
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 1.1e-15 87.0 78 55.1
Aqoxy6G02290 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.4e-15 86.7 69 60.9
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 1.4e-15 86.7 84 51.2
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 1.4e-15 86.7 80 52.5
Sabra06G0125300 Salix brachista HOM05D002350 ORTHO05D000091 1.4e-15 86.7 92 47.8
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 2.4e-15 85.9 93 50.5
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 3.1e-15 85.5 126 42.1
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 3.1e-15 85.5 121 43.0
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 4.1e-15 85.1 78 53.8
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 4.1e-15 85.1 78 53.8
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 4.1e-15 85.1 84 50.0
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 4.1e-15 85.1 104 49.0
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 5.3e-15 84.7 77 51.9
A07p00780 Brassica napus HOM05D002350 ORTHO05D000091 5.3e-15 84.7 77 51.9
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 5.3e-15 84.7 77 51.9
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 5.3e-15 84.7 77 51.9
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 5.3e-15 84.7 77 51.9
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 5.3e-15 84.7 125 40.8
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 9.1e-15 84.0 93 46.2
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 1.2e-14 83.6 79 53.2
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 1.5e-14 83.2 127 40.9
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 1.5e-14 83.2 89 41.6
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 2.0e-14 82.8 109 45.0
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 2.0e-14 82.8 77 51.9
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 2.6e-14 82.4 84 47.6
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 2.6e-14 82.4 89 49.4
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 2.6e-14 82.4 89 47.2
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 2.6e-14 82.4 79 54.4
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 3.4e-14 82.0 89 46.1
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 3.4e-14 82.0 77 50.6
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 3.4e-14 82.0 120 42.5
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 3.4e-14 82.0 120 42.5
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 3.4e-14 82.0 77 50.6
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 4.5e-14 81.6 84 47.6
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 4.5e-14 81.6 77 53.2
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 4.5e-14 81.6 89 48.3
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 4.5e-14 81.6 77 53.2
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 4.5e-14 81.6 121 38.0
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 5.9e-14 81.3 75 52.0
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 7.7e-14 80.9 104 46.2
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 7.7e-14 80.9 77 53.2
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 7.7e-14 80.9 83 45.8
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 7.7e-14 80.9 77 50.6
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.3e-13 80.1 77 49.4
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 1.3e-13 80.1 59 64.4
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 2.2e-13 79.3 74 51.4
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.2e-13 79.3 84 47.6
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 2.9e-13 79.0 82 50.0
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 3.8e-13 78.6 77 51.9
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 3.8e-13 78.6 78 47.4
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 3.8e-13 78.6 69 53.6
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 3.8e-13 78.6 82 50.0
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 5.0e-13 78.2 118 38.1
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 5.0e-13 78.2 77 48.1
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.0e-13 78.2 81 49.4
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 5.0e-13 78.2 126 35.7
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 6.5e-13 77.8 121 40.5
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 8.5e-13 77.4 78 47.4
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 1.1e-12 77.0 126 37.3
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 1.4e-12 76.6 81 48.1
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 1.9e-12 76.3 78 51.3
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 1.9e-12 76.3 84 44.0
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 2.5e-12 75.9 104 44.2
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 2.5e-12 75.9 104 44.2
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 2.5e-12 75.9 77 49.4
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.5e-12 75.9 77 49.4
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.5e-12 75.9 77 48.1
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 3.2e-12 75.5 77 48.1
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 4.2e-12 75.1 120 40.8
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 1.2e-11 73.6 77 49.4
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.1e-11 72.8 81 48.1
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 2.1e-11 72.8 81 48.1
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 2.1e-11 72.8 125 37.6
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 4.7e-11 71.6 81 48.1
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 6.1e-11 71.2 82 46.3
CDE05G2422 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 7.9e-11 70.9 54 59.3
AUR62042309 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.0e-10 70.5 84 42.9
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 1.4e-10 70.1 80 46.2
SEGI_05646 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 1.8e-10 69.7 74 52.7
SEGI_17992 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 1.8e-10 69.7 74 52.7
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 2.3e-10 69.3 118 38.1
Hund09132 Selenicereus undatus HOM05D002350 ORTHO05D000091 3.9e-10 68.6 77 46.8
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 5.1e-10 68.2 127 33.9
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 5.1e-10 68.2 105 42.9
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 8.8e-10 67.4 125 35.2
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 2.0e-09 66.2 118 37.3
RcHm_v2.0_Chr2g0091681 Rosa chinensis HOM05D002350 ORTHO05D000091 2.0e-09 66.2 53 54.7
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 2.6e-09 65.9 119 40.3
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 3.3e-09 65.5 110 35.5
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 5.7e-09 64.7 112 40.2
Ca_25564_v3 Cicer arietinum L. HOM05D002350 ORTHO05D000091 5.7e-09 64.7 80 41.2
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 5.7e-09 64.7 122 40.2
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 9.7e-09 63.9 78 46.2
AUR62021424 Chenopodium quinoa HOM05D002350 ORTHO05D000091 9.7e-09 63.9 79 44.3
AagrBONN_evm.TU.Sc2ySwM_368.2512 Anthoceros agrestis HOM05D002350 ORTHO05D000091 1.3e-08 63.5 78 43.6
AUR62010902 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.3e-08 63.5 59 52.5
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.7e-08 63.2 96 39.6
BcaB03g16780 Brassica carinata HOM05D002350 ORTHO05D000091 1.4e-07 60.1 49 61.2
COL.COLO4_34762 Corchorus olitorius HOM05D002350 ORTHO05D000091 9.1e-07 57.4 50 52.0
RcHm_v2.0_Chr2g0091721 Rosa chinensis HOM05D002350 ORTHO05D000091 2.6e-06 55.8 80 40.0
AagrBONN_evm.TU.Sc2ySwM_344.1644 Anthoceros agrestis HOM05D002042 ORTHO05D003928 7.7e-06 54.3 68 39.7


User provided reference genes

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