Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049923 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 1.2e-138 496.5 242 100.0
Dinv28397 Davidia involucrata HOM05D006494 ORTHO05D007787 1.5e-61 240.4 258 54.3
Rhsim09G0200100 Rhododendron simsii HOM05D006494 ORTHO05D007787 9.6e-61 237.7 259 54.8
Rhsim09G0199800 Rhododendron simsii HOM05D006494 ORTHO05D007787 2.8e-60 236.1 259 54.4
vmacro09820 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 6.5e-57 224.9 259 53.7
Actinidia20864 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.1e-53 214.2 258 51.6
Actinidia34147 Actinidia chinensis HOM05D006494 ORTHO05D007787 9.7e-53 211.1 259 51.0
vmacro06639 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 8.2e-52 208.0 195 61.0
Hma1.2p1_0327F.1_g126290 Hydrangea macrophylla HOM05D006494 ORTHO05D007787 1.1e-45 187.6 258 47.7
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.2e-44 183.3 191 57.1
CSS0030697 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 1.1e-40 171.0 170 61.2
QL09p013118 Quercus lobata HOM05D006494 ORTHO05D007787 1.5e-37 160.6 260 42.3
Ciclev10005709m.g Citrus clementina HOM05D006494 ORTHO05D007787 1.6e-34 150.6 255 40.0
Thecc.04G169800 Theobroma cacao HOM05D006494 ORTHO05D007787 1.6e-34 150.6 256 37.9
TWI23G1164 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 1.6e-34 150.6 257 39.7
TWI39G0535 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 2.0e-34 150.2 260 38.8
Eucgr.K00289 Eucalyptus grandis HOM05D006494 ORTHO05D007787 1.0e-33 147.9 257 40.9
Rhsim03G0190000 Rhododendron simsii HOM05D006494 ORTHO05D007787 1.0e-33 147.9 168 53.0
Cfa016278 Carpinus fangiana HOM05D006494 ORTHO05D007787 3.8e-33 146.0 266 39.1
Duzib151G1204 Durio zibethinus HOM05D006494 ORTHO05D007787 3.8e-33 146.0 256 39.1
Haze_00032 Corylus avellana HOM05D006494 ORTHO05D007787 1.5e-32 144.1 267 39.7
Duzib268G1872 Durio zibethinus HOM05D006494 ORTHO05D007787 1.9e-32 143.7 258 39.1
Actinidia08572 Actinidia chinensis HOM05D006494 ORTHO05D007787 5.5e-32 142.1 145 55.9
PGR142G1234 Punica granatum HOM05D006494 ORTHO05D007787 1.4e-30 137.5 263 39.2
Gohir.A02G091800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 4.0e-30 136.0 251 36.3
Cpa.g.sc107.95 Carica papaya HOM05D006494 ORTHO05D007787 1.5e-29 134.0 249 38.6
Sopen03g004010 Solanum pennellii HOM05D006494 ORTHO05D007787 3.7e-28 129.4 258 38.4
DCAR_020265 Daucus carota HOM05D006494 ORTHO05D007787 6.3e-28 128.6 263 38.8
Manes.06G151500 Manihot esculenta HOM05D006494 ORTHO05D007787 6.3e-28 128.6 249 36.9
Nitab4.5_0000084g0320 Nicotiana tabacum HOM05D006494 ORTHO05D007787 6.3e-28 128.6 260 38.1
Migut.F01093 Erythranthe guttata HOM05D006494 ORTHO05D007787 8.2e-28 128.3 251 38.6
Actinidia03131 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.8e-27 127.1 108 63.9
PGSC0003DMG400010122 Solanum tuberosum HOM05D006494 ORTHO05D007787 3.1e-27 126.3 258 38.0
Gohir.D02G108900 Gossypium hirsutum HOM05D006494 ORTHO05D007787 5.3e-27 125.6 252 34.9
Gorai.005G124800 Gossypium raimondii HOM05D006494 ORTHO05D007787 5.3e-27 125.6 252 34.9
COL.COLO4_28030 Corchorus olitorius HOM05D006494 ORTHO05D007787 9.1e-27 124.8 256 36.7
CiPaw.05G263300 Carya illinoinensis HOM05D006494 ORTHO05D007787 3.5e-26 122.9 241 38.6
Gorai.011G137900 Gossypium raimondii HOM05D006494 ORTHO05D007787 1.0e-25 121.3 251 37.5
Gohir.D10G124800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.3e-25 120.9 251 37.5
TAR629G2733 Trochodendron aralioides HOM05D006494 ORTHO05D007787 1.7e-25 120.6 275 36.7
Solyc03g025160.4 Solanum lycopersicum HOM05D006494 ORTHO05D007787 3.8e-25 119.4 186 41.9
TWI39G0536 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 1.1e-24 117.9 257 33.9
Manes.14G023400 Manihot esculenta HOM05D006494 ORTHO05D007787 4.2e-24 115.9 184 41.8
SalBow2G1868 Salvia bowleyana HOM05D006494 ORTHO05D007787 4.2e-24 115.9 257 39.3
SalBow2G2185 Salvia bowleyana HOM05D006494 ORTHO05D007787 4.2e-24 115.9 257 39.3
Cc02_g02520 Coffea canephora HOM05D006494 ORTHO05D007787 5.5e-24 115.5 249 38.6
Gohir.A10G141700 Gossypium hirsutum HOM05D006494 ORTHO05D007787 9.4e-24 114.8 251 36.3
Prupe.7G058200 Prunus persica HOM05D006494 ORTHO05D007787 1.2e-23 114.4 227 38.8
MSTRG.8473 Avicennia marina HOM05D006494 ORTHO05D007787 2.1e-23 113.6 260 35.8
SGA_v2.0_scaffold10G05304 Striga asiatica HOM05D006494 ORTHO05D007787 2.1e-23 113.6 254 34.3
COL.COLO4_10079 Corchorus olitorius HOM05D006494 ORTHO05D007787 8.0e-23 111.7 255 36.5
ECA232G1863 Erigeron canadensis HOM05D006494 ORTHO05D007787 1.4e-22 110.9 257 35.4
Oeu022606.1 Olea europaea HOM05D006494 ORTHO05D007787 4.0e-22 109.4 250 35.2
Ciclev10030388m.g Citrus clementina HOM05D006494 ORTHO05D007787 5.2e-22 109.0 264 34.5
Migut.F00309 Erythranthe guttata HOM05D006494 ORTHO05D007787 4.4e-21 105.9 208 37.0
ECA232G4003 Erigeron canadensis HOM05D006494 ORTHO05D007787 3.7e-20 102.8 214 38.3
Potri.017G113501 Populus trichocarpa HOM05D006494 ORTHO05D007787 4.1e-19 99.4 169 39.1
Nn6g33336 Nelumbo nucifera HOM05D006494 ORTHO05D007787 5.4e-19 99.0 241 37.3
PGSC0003DMG400029922 Solanum tuberosum HOM05D006494 ORTHO05D007787 5.4e-19 99.0 202 36.1
Thecc.03G182400 Theobroma cacao HOM05D006494 ORTHO05D007787 4.5e-18 95.9 259 32.4
Sed0015630 Sechium edule HOM05D006494 ORTHO05D007787 5.9e-18 95.5 246 32.5
Peaxi162Scf00444g00014 Petunia axillaris HOM05D006494 ORTHO05D007787 1.0e-17 94.7 291 30.6
CsaV3_3G017370 Cucumis sativus L. HOM05D006494 ORTHO05D007787 1.3e-17 94.4 259 29.3
MD07G1041300 Malus domestica HOM05D006494 ORTHO05D007787 1.3e-17 94.4 248 32.7
Nitab4.5_0000572g0070 Nicotiana tabacum HOM05D006494 ORTHO05D007787 6.5e-17 92.0 223 36.3
Oeu006795.1 Olea europaea HOM05D006494 ORTHO05D007787 6.5e-17 92.0 243 36.6
ClCG05G008270 Citrullus lanatus HOM05D006494 ORTHO05D007787 1.5e-16 90.9 258 30.6
Lalb_Chr02g0144041 Lupinus albus HOM05D006494 ORTHO05D007787 5.5e-16 89.0 260 29.6
Ca_10732_v3 Cicer arietinum L. HOM05D006494 ORTHO05D007787 6.1e-15 85.5 219 32.4
Lj5g0022841 Lotus japonicus HOM05D006494 ORTHO05D007787 8.0e-15 85.1 160 37.5
RcHm_v2.0_Chr3g0482771 Rosa chinensis HOM05D006494 ORTHO05D007787 8.0e-15 85.1 253 32.4
MELO3C018639.2 Cucumis melo HOM05D006494 ORTHO05D007787 1.0e-14 84.7 260 29.6
HanXRQChr09g0252471 Helianthus annuus HOM05D006494 ORTHO05D007787 1.0e-14 84.7 239 32.2
MD12G1079700 Malus domestica HOM05D006494 ORTHO05D007787 1.0e-14 84.7 254 30.3
PSO478G4343 Papaver somniferum HOM05D006494 ORTHO05D007787 1.0e-14 84.7 208 32.7
Potri.004G101600 Populus trichocarpa HOM05D006494 ORTHO05D007787 1.0e-14 84.7 166 34.9
Phvul.007G073600 Phaseolus vulgaris HOM05D006494 ORTHO05D007787 1.8e-14 84.0 162 37.0
Glyma.10G231900 Glycine max HOM05D006494 ORTHO05D007787 2.3e-14 83.6 263 29.7
Sabra04G0078700 Salix brachista HOM05D006494 ORTHO05D007787 2.3e-14 83.6 168 36.3
VMungo0720G0554 Vigna mungo HOM05D006494 ORTHO05D007787 3.0e-14 83.2 168 34.5
Glyma.20G162200 Glycine max HOM05D006494 ORTHO05D007787 5.2e-14 82.4 219 32.0
MD14G1075900 Malus domestica HOM05D006494 ORTHO05D007787 6.8e-14 82.0 251 33.1
unitig_46.g18800 Utricularia gibba HOM05D006494 ORTHO05D007787 6.8e-14 82.0 178 36.5
Prupe.7G043900 Prunus persica HOM05D006494 ORTHO05D007787 1.2e-13 81.3 153 35.9
arahy.Tifrunner.gnm1.ann1.HAQV4X Arachis hypogaea HOM05D006494 ORTHO05D007787 2.8e-12 76.6 175 33.7
PSO063G3044 Papaver somniferum HOM05D006494 ORTHO05D007787 2.8e-12 76.6 209 33.5
TPR.G26961 Trifolium pratense HOM05D006494 ORTHO05D007787 2.8e-12 76.6 178 32.0
Sed0010736 Sechium edule HOM05D006494 ORTHO05D007787 3.7e-12 76.3 246 30.1
PSO782G5664 Papaver somniferum HOM05D006494 ORTHO05D007787 1.1e-11 74.7 198 29.8
arahy.Tifrunner.gnm1.ann1.J3K5XQ Arachis hypogaea HOM05D006494 ORTHO05D007787 2.4e-11 73.6 175 33.1
SHI13763 Sapria himalayana HOM05D000481 ORTHO05D003804 4.1e-11 72.8 115 42.6
COL.COLO4_10083 Corchorus olitorius HOM05D006494 ORTHO05D007787 2.0e-10 70.5 151 38.4
Peaxi162Scf00618g00753 Petunia axillaris HOM05D006494 ORTHO05D007787 3.5e-10 69.7 295 27.8
CiPaw.12G091000 Carya illinoinensis HOM05D006494 ORTHO05D007787 1.3e-09 67.8 210 31.4
Lsat_1_v5_gn_9_57501 Lactuca sativa HOM05D006494 ORTHO05D007787 6.6e-09 65.5 242 28.9
RcHm_v2.0_Chr3g0482351 Rosa chinensis HOM05D006494 ORTHO05D007787 5.6e-08 62.4 266 30.1
RcHm_v2.0_Chr3g0486201 Rosa chinensis HOM05D006494 ORTHO05D007787 7.3e-08 62.0 134 34.3
Hund04846 Selenicereus undatus HOM05D014004 ORTHO05D015823 1.6e-07 60.8 213 31.5
MBI13_g04793_MAGBIO Magnolia biondii HOM05D003639 ORTHO05D004246 2.8e-07 60.1 193 30.1
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 3.6e-07 59.7 213 28.6
Sopen06g011990 Solanum pennellii HOM05D006494 ORTHO05D007787 4.7e-07 59.3 160 32.5
Nitab4.5_0001095g0030 Nicotiana tabacum HOM05D007739 ORTHO05D009838 8.0e-07 58.5 175 29.1
Psat0s2528g0040 Pisum sativum HOM05D006494 ORTHO05D007787 1.0e-06 58.2 131 29.8
Rhsim01G0194300 Rhododendron simsii HOM05D007739 ORTHO05D009838 1.4e-06 57.8 178 32.0
C03p46780 Brassica napus HOM05D007739 ORTHO05D009838 1.8e-06 57.4 136 30.9
arahy.Tifrunner.gnm1.ann1.78PZ7R Arachis hypogaea HOM05D062081 ORTHO05D007787 3.0e-06 56.6 139 30.9
BolC3t16943H Brassica oleracea HOM05D007739 ORTHO05D009838 5.2e-06 55.8 182 28.6
FAN14G1471 Fragaria x ananassa HOM05D006494 ORTHO05D007787 5.2e-06 55.8 208 26.4
PGR119G1777 Punica granatum HOM05D007739 ORTHO05D009838 5.2e-06 55.8 186 29.6
arahy.Tifrunner.gnm1.ann1.P4DBMR Arachis hypogaea HOM05D062081 ORTHO05D007787 8.9e-06 55.1 138 29.7


User provided reference genes

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