Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 2.9e-255 884.8 466 100.0
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 2.8e-149 532.7 478 61.7
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 1.5e-147 526.9 460 63.9
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 2.3e-143 513.1 446 63.0
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 7.6e-139 498.0 405 65.2
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 7.4e-126 454.9 405 60.7
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 3.4e-115 419.5 437 57.7
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 3.8e-114 416.0 405 57.5
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 4.7e-112 409.1 379 57.8
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 3.9e-111 406.0 397 56.4
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 5.7e-110 402.1 389 56.3
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 5.7e-110 402.1 387 57.4
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 1.6e-107 394.0 390 56.4
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.6e-107 394.0 414 53.9
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 7.7e-107 391.7 406 55.7
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 7.7e-107 391.7 390 55.4
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 1.0e-106 391.3 414 53.9
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 2.2e-106 390.2 467 51.4
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 9.4e-105 384.8 414 52.9
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 1.6e-104 384.0 396 55.3
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 2.1e-104 383.6 432 53.9
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 2.7e-104 383.3 393 54.2
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 8.0e-104 381.7 407 51.8
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 8.0e-104 381.7 384 56.0
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.8e-103 380.6 402 53.2
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 1.1e-102 377.9 418 51.4
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 2.6e-102 376.7 415 53.0
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 7.5e-102 375.2 399 52.1
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 1.3e-101 374.4 391 53.5
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 1.3e-101 374.4 391 53.5
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 2.8e-101 373.2 395 52.9
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 8.2e-101 371.7 391 53.5
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 1.6e-99 367.5 391 52.2
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 2.0e-99 367.1 409 51.3
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 5.9e-99 365.5 377 52.8
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 2.5e-97 360.1 386 52.3
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 1.2e-96 357.8 375 52.5
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 1.2e-96 357.8 386 51.0
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.2e-96 357.8 399 51.6
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 2.1e-96 357.1 411 50.4
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 1.4e-95 354.4 371 53.1
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 1.4e-95 354.4 410 50.0
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 2.3e-95 353.6 336 55.7
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 4.0e-95 352.8 371 53.1
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 4.0e-95 352.8 371 53.1
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 6.8e-95 352.1 411 50.1
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 8.8e-95 351.7 382 52.9
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 2.0e-94 350.5 386 51.3
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 2.0e-94 350.5 388 52.3
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 2.6e-94 350.1 386 51.0
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 4.4e-94 349.4 382 51.0
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 2.2e-93 347.1 386 49.7
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 4.8e-93 345.9 389 49.4
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 1.1e-92 344.7 385 50.4
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 2.4e-92 343.6 399 49.4
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 3.1e-92 343.2 382 50.3
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 7.0e-92 342.0 388 50.8
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 2.0e-91 340.5 406 49.0
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 2.0e-91 340.5 390 50.5
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 3.5e-91 339.7 394 49.0
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 3.5e-91 339.7 401 50.4
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 4.5e-91 339.3 389 50.6
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 5.9e-91 339.0 398 50.5
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 1.3e-90 337.8 346 54.3
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.7e-90 337.4 422 47.6
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 2.2e-90 337.0 264 67.8
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.1e-89 334.7 388 49.7
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 1.5e-89 334.3 398 49.2
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 1.9e-89 334.0 388 50.0
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 2.5e-89 333.6 375 49.9
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 3.2e-89 333.2 341 54.5
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 3.2e-89 333.2 496 44.2
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 9.4e-89 331.6 385 47.0
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.7e-88 330.1 406 49.0
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 1.4e-87 327.8 378 50.5
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 1.1e-84 318.2 398 46.2
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 5.4e-84 315.8 378 48.4
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 1.5e-81 307.8 375 46.7
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 9.5e-81 305.1 408 43.6
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 1.8e-79 300.8 323 53.6
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 8.3e-77 292.0 381 45.4
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 5.4e-76 289.3 513 37.8
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 5.4e-76 289.3 454 40.5
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.6e-75 287.7 380 45.0
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 3.0e-74 283.5 357 44.8
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 1.1e-73 281.6 370 44.6
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 5.2e-71 272.7 409 43.0
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 3.2e-68 263.5 397 40.6
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 9.5e-65 251.9 406 43.1
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.6e-64 251.1 404 43.1
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 6.2e-64 249.2 267 54.7
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 5.8e-62 242.7 413 39.2
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 7.5e-62 242.3 399 39.1
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 9.8e-62 241.9 177 70.6
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.2e-59 235.0 161 73.3
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 2.7e-59 233.8 165 71.5
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 8.1e-56 222.2 211 57.3
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 4.0e-55 219.9 469 34.8
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.7e-50 204.5 137 76.6
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 8.1e-48 195.7 403 34.0
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 3.1e-47 193.7 417 34.3
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 2.0e-46 191.0 282 41.8
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.6e-40 171.4 402 32.3
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 1.4e-31 141.7 244 38.5
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 7.6e-30 136.0 216 39.4
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.3e-29 135.2 226 40.7
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 6.0e-27 126.3 79 79.7
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 2.4e-23 114.4 284 32.0
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 5.3e-23 113.2 84 67.9
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 2.2e-21 107.8 121 47.9
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 1.9e-20 104.8 75 66.7
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 3.2e-20 104.0 254 33.9
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 7.1e-20 102.8 83 67.5
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 3.7e-16 90.5 307 28.0
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 5.9e-14 83.2 75 56.0
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.1e-12 79.0 46 80.4
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 2.5e-12 77.8 56 67.9
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 3.6e-11 73.9 208 27.4
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.3e-10 71.2 72 54.2
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.3e-08 65.5 54 64.8
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 3.7e-08 63.9 166 27.1
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 5.3e-07 60.1 158 34.2
CAN.G1343.18 Capsicum annuum HOM05D006262 ORTHO05D007266 2.0e-06 58.2 74 44.6


User provided reference genes

Program Settings