Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.6e-68 262.7 136 100.0
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.6e-68 262.7 136 100.0
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.9e-29 132.9 135 55.6
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 5.5e-29 131.3 150 58.0
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.5e-26 122.5 148 52.0
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.5e-26 122.5 148 52.0
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.2e-25 119.4 132 54.5
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 2.2e-25 119.4 149 52.3
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 6.3e-25 117.9 141 51.1
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.4e-24 115.9 144 52.1
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.9e-22 109.0 129 53.5
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.8e-22 108.6 129 55.0
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.8e-22 108.6 129 55.0
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.4e-21 106.7 140 48.6
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.5e-21 105.9 142 46.5
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.1e-18 97.1 117 51.3
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.5e-18 95.9 126 46.8
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.4e-16 90.1 133 43.6
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 2.4e-16 89.4 149 39.6
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 9.1e-16 87.4 135 46.7
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.2e-15 87.0 127 45.7
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 2.0e-15 86.3 136 43.4
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 4.5e-15 85.1 150 44.0
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 4.5e-15 85.1 132 38.6
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 5.9e-15 84.7 143 44.1
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 5.9e-15 84.7 129 41.1
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.0e-14 84.0 132 42.4
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 1.3e-14 83.6 141 42.6
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.7e-14 83.2 120 42.5
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 2.9e-14 82.4 122 42.6
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 5.0e-14 81.6 124 40.3
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 5.0e-14 81.6 143 42.7
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 8.5e-14 80.9 123 46.3
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 8.5e-14 80.9 131 38.2
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 1.1e-13 80.5 128 41.4
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 1.4e-13 80.1 136 41.9
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.9e-13 79.7 136 37.5
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.9e-13 79.7 126 41.3
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 5.5e-13 78.2 144 40.3
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 5.5e-13 78.2 115 41.7
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 7.2e-13 77.8 130 38.5
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 7.2e-13 77.8 141 39.7
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.2e-13 77.8 113 40.7
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 9.4e-13 77.4 126 37.3
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 2.1e-12 76.3 142 38.7
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.1e-12 76.3 130 41.5
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 2.7e-12 75.9 182 32.4
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.7e-12 75.9 124 39.5
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 4.7e-12 75.1 118 41.5
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 6.1e-12 74.7 120 41.7
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 6.1e-12 74.7 127 42.5
Rhsim01G0052600 Rhododendron simsii HOM05D016725 ORTHO05D003125 6.1e-12 74.7 94 47.9
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 6.1e-12 74.7 128 42.2
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 7.9e-12 74.3 158 39.2
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 1.0e-11 73.9 124 41.1
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.0e-11 73.9 148 37.8
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 1.0e-11 73.9 141 40.4
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 1.4e-11 73.6 128 38.3
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 1.4e-11 73.6 129 39.5
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 1.8e-11 73.2 126 38.9
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.8e-11 73.2 149 36.9
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.8e-11 73.2 136 36.0
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.3e-11 72.8 108 42.6
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 2.3e-11 72.8 130 36.2
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.0e-11 72.4 134 41.8
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 3.9e-11 72.0 124 34.7
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 6.7e-11 71.2 126 40.5
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.7e-11 71.2 115 40.9
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 6.7e-11 71.2 182 31.3
Rhsim01G0050000 Rhododendron simsii HOM05D016725 ORTHO05D003125 6.7e-11 71.2 127 40.9
Rhsim01G0052500 Rhododendron simsii HOM05D016725 ORTHO05D003125 6.7e-11 71.2 140 39.3
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 1.1e-10 70.5 116 40.5
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 1.1e-10 70.5 132 37.1
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.5e-10 70.1 152 38.2
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.0e-10 69.7 127 41.7
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 2.0e-10 69.7 136 36.0
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.6e-10 69.3 120 36.7
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 2.6e-10 69.3 97 49.5
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 2.6e-10 69.3 138 39.1
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.3e-10 68.9 112 47.3
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 4.4e-10 68.6 143 38.5
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 5.7e-10 68.2 115 40.9
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.7e-10 68.2 127 40.9
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 7.4e-10 67.8 124 36.3
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 7.4e-10 67.8 147 36.7
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 9.7e-10 67.4 120 35.8
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 9.7e-10 67.4 101 42.6
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 9.7e-10 67.4 129 40.3
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 1.3e-09 67.0 137 36.5
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 1.3e-09 67.0 121 35.5
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 1.3e-09 67.0 92 50.0
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 1.3e-09 67.0 105 41.9
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 1.7e-09 66.6 140 38.6
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 1.7e-09 66.6 146 32.2
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.8e-09 65.9 144 34.7
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 2.8e-09 65.9 159 35.2
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 2.8e-09 65.9 119 37.0
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 3.7e-09 65.5 144 33.3
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.7e-09 65.5 139 36.0
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.8e-09 65.1 147 35.4
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 4.8e-09 65.1 134 36.6
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 6.3e-09 64.7 137 36.5
Nitab4.5_0001751g0090 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.3e-09 64.7 102 40.2
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 6.3e-09 64.7 155 33.5
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 8.2e-09 64.3 98 40.8
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 8.2e-09 64.3 129 31.8
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 1.1e-08 63.9 134 33.6
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 1.1e-08 63.9 134 33.6
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.1e-08 63.9 147 35.4
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 1.1e-08 63.9 136 36.0
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 1.4e-08 63.5 124 36.3
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 1.4e-08 63.5 151 35.8
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 1.8e-08 63.2 113 41.6
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 2.4e-08 62.8 118 41.5
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 3.1e-08 62.4 71 50.7
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 3.1e-08 62.4 127 39.4
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.1e-08 62.4 124 34.7
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.1e-08 62.0 147 34.7
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 4.1e-08 62.0 129 37.2
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 5.3e-08 61.6 141 32.6
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 5.3e-08 61.6 82 45.1
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.3e-08 61.6 69 46.4
ATR0629G091 Amborella trichopoda HOM05D003969 ORTHO05D003125 7.0e-08 61.2 96 40.6
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 1.2e-07 60.5 134 34.3
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 2.6e-07 59.3 84 44.0
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.6e-07 59.3 87 42.5
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 2.6e-07 59.3 113 40.7
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.4e-07 58.9 113 37.2
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.4e-07 58.9 80 41.2
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 3.4e-07 58.9 96 39.6
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.4e-07 58.9 124 29.8
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.5e-07 58.5 141 35.5
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 4.5e-07 58.5 124 36.3
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.5e-07 58.5 95 38.9
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.5e-07 58.5 85 41.2
Peaxi162Scf01184g00133 Petunia axillaris HOM05D003969 ORTHO05D003125 4.5e-07 58.5 120 37.5
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.9e-07 58.2 90 37.8
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 7.7e-07 57.8 121 37.2
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 7.7e-07 57.8 131 31.3
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 7.7e-07 57.8 131 31.3
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.7e-07 57.8 97 38.1
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 1.0e-06 57.4 118 34.7
SEGI_01536 Sequoiadendron giganteum HOM05D048342 ORTHO05D050950 1.0e-06 57.4 132 34.1
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.7e-06 56.6 82 40.2
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 1.7e-06 56.6 123 29.3
Prupe.1G486000 Prunus persica HOM05D019695 ORTHO05D022679 2.2e-06 56.2 134 30.6
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.8e-06 55.5 132 31.1
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 6.5e-06 54.7 124 37.1
ATR0763G001 Amborella trichopoda HOM05D003969 ORTHO05D003125 6.5e-06 54.7 117 29.9
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 6.5e-06 54.7 94 37.2
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 6.5e-06 54.7 74 44.6
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.5e-06 54.7 89 42.7
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.5e-06 54.7 89 42.7
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.5e-06 54.7 117 35.9
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.5e-06 54.7 117 35.9
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 8.5e-06 54.3 122 31.1
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.5e-06 54.3 87 39.1
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 8.5e-06 54.3 132 30.3
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 8.5e-06 54.3 132 30.3


User provided reference genes

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