Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.4e-133 478.8 233 100.0
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.2e-132 476.5 233 99.6
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 5.0e-91 338.2 209 76.6
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 8.6e-91 337.4 224 73.2
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.4e-88 330.1 218 72.9
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.8e-88 327.8 218 72.9
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.7e-86 323.2 223 66.8
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.2e-84 317.0 208 70.7
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 6.6e-83 311.2 229 67.2
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 9.9e-79 297.4 226 64.6
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.3e-78 297.0 232 64.2
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.7e-78 296.6 205 67.3
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.7e-78 296.6 232 64.2
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.4e-78 294.7 227 61.2
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 8.4e-78 294.3 213 67.6
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.2e-76 290.4 232 62.1
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.6e-76 290.0 198 67.7
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.1e-76 289.7 230 60.0
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.7e-76 289.3 201 65.7
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.5e-76 288.9 196 66.8
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 4.6e-76 288.5 197 66.5
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.3e-75 287.0 213 61.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.3e-75 287.0 217 64.1
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.7e-75 286.6 221 61.1
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 2.3e-75 286.2 219 61.2
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 6.6e-75 284.6 215 65.1
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.1e-74 283.9 230 59.6
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.1e-74 283.9 218 62.4
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.9e-74 283.1 205 65.4
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.9e-74 283.1 227 61.2
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.9e-74 283.1 201 66.2
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 1.9e-74 283.1 205 64.9
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.5e-74 282.7 210 63.8
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.3e-74 282.0 227 61.2
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 7.3e-74 281.2 216 63.0
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 9.6e-74 280.8 215 60.5
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 9.6e-74 280.8 200 64.5
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.1e-73 279.6 215 62.3
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 2.1e-73 279.6 199 61.8
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.6e-73 278.9 215 61.9
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 3.6e-73 278.9 228 57.5
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-72 277.3 196 66.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.4e-72 276.9 228 59.2
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.8e-72 276.6 218 63.8
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.8e-72 276.6 206 63.1
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 3.1e-72 275.8 217 61.8
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.0e-72 275.4 220 58.2
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 5.2e-72 275.0 235 58.7
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.9e-72 274.2 216 61.1
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 2.0e-71 273.1 219 60.7
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 2.0e-71 273.1 207 60.4
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 2.6e-71 272.7 230 57.4
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 2.6e-71 272.7 200 62.0
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 4.4e-71 271.9 210 61.4
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 9.9e-71 270.8 199 63.8
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 9.9e-71 270.8 199 63.8
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.7e-70 270.0 220 58.6
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 2.2e-70 269.6 216 59.3
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 2.9e-70 269.2 208 60.1
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 2.9e-70 269.2 195 62.6
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 3.8e-70 268.9 212 59.4
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 3.8e-70 268.9 208 60.6
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 6.4e-70 268.1 210 61.4
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.1e-69 267.3 207 59.4
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.1e-69 267.3 221 58.8
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.9e-69 266.5 179 72.1
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.4e-69 266.2 210 61.4
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 3.2e-69 265.8 207 59.4
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 4.2e-69 265.4 207 60.4
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 4.2e-69 265.4 215 59.1
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.2e-68 263.8 222 59.0
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.2e-68 263.8 221 56.1
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.1e-68 263.1 219 56.2
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.7e-68 262.7 208 61.1
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.5e-68 262.3 197 64.5
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.5e-68 262.3 197 64.5
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 4.6e-68 261.9 212 58.5
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 6.0e-68 261.5 235 53.6
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.0e-67 260.8 193 61.7
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.7e-67 260.0 216 58.3
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.7e-67 260.0 233 56.2
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 2.3e-67 259.6 228 57.9
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.9e-67 258.8 203 60.1
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 6.6e-67 258.1 176 64.8
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 8.7e-67 257.7 211 58.8
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.1e-66 257.3 218 56.4
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.5e-66 256.9 226 52.7
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.9e-66 256.5 194 61.9
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 2.5e-66 256.1 219 58.4
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.5e-66 256.1 214 57.5
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.6e-66 255.0 223 57.0
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 1.3e-65 253.8 218 56.9
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-65 253.4 211 58.3
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 1.6e-65 253.4 211 58.3
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 2.1e-65 253.1 213 57.7
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 2.8e-65 252.7 220 57.7
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 3.6e-65 252.3 222 57.2
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 3.6e-65 252.3 211 57.8
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 6.2e-65 251.5 218 58.3
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.4e-64 250.4 205 56.6
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.4e-64 250.4 223 55.6
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 5.3e-64 248.4 229 53.7
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 5.3e-64 248.4 205 55.6
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.2e-63 247.3 169 67.5
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.5e-63 246.9 214 55.1
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.6e-63 246.1 221 54.3
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.4e-63 245.7 232 58.6
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 4.5e-63 245.4 221 53.4
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 5.8e-63 245.0 200 59.0
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 9.9e-63 244.2 221 54.8
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.2e-62 243.0 223 54.7
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 2.9e-62 242.7 221 53.8
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.9e-62 241.9 219 54.8
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 8.4e-62 241.1 226 54.4
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.1e-61 240.7 219 53.9
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.1e-61 240.7 219 54.3
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-61 240.4 219 55.7
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.9e-61 240.0 198 56.1
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.2e-61 239.2 205 56.6
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 3.2e-61 239.2 207 53.6
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.2e-61 239.2 214 55.6
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 3.2e-61 239.2 223 52.5
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-60 236.9 219 54.3
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.6e-60 236.9 221 52.5
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 5.1e-59 231.9 215 54.9
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 2.5e-58 229.6 210 52.4
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 5.6e-58 228.4 219 51.6
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 5.6e-58 228.4 219 51.6
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 7.4e-58 228.0 219 51.6
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 9.6e-58 227.6 215 54.4
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 9.6e-58 227.6 215 54.4
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-57 227.3 209 52.2
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.6e-57 226.9 153 69.9
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.7e-57 225.7 249 48.2
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 6.2e-57 224.9 215 52.1
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.4e-56 223.8 127 82.7
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 3.1e-56 222.6 220 50.9
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 9.0e-56 221.1 198 50.5
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 3.4e-55 219.2 233 50.6
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.4e-55 219.2 196 56.1
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.7e-54 216.9 234 49.6
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 4.2e-53 212.2 224 49.6
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 3.5e-52 209.1 187 54.5
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.5e-47 193.7 144 63.9
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 4.5e-47 192.2 194 46.9
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.5e-44 182.6 166 53.6
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 9.7e-42 174.5 138 62.3
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 6.9e-40 168.3 153 56.2
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 2.6e-39 166.4 209 42.6
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 3.4e-39 166.0 101 76.2
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.3e-38 164.1 194 43.3
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.2e-37 158.3 119 64.7
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 1.8e-35 153.7 153 50.3
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 6.3e-33 145.2 110 63.6
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.8e-32 143.7 118 53.4
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.1e-32 142.5 119 58.0
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.5e-31 140.6 154 50.0
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 5.0e-30 135.6 114 58.8
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.9e-29 133.7 109 57.8
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 3.3e-26 122.9 107 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 4.4e-26 122.5 150 40.7
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.8e-25 119.8 91 64.8
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-23 114.4 110 50.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-23 114.4 131 47.3
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 5.9e-23 112.1 176 32.4
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-22 110.9 86 59.3
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.4e-21 107.5 103 50.5
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.5e-21 106.7 88 51.1
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 9.4e-21 104.8 122 47.5
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 2.1e-20 103.6 132 43.2
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 6.1e-20 102.1 83 57.8
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 3.0e-19 99.8 123 51.2
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-18 97.8 92 50.0
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.8e-17 93.2 106 47.2
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 7.7e-15 85.1 98 45.9
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 3.8e-14 82.8 62 56.5
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-11 74.3 61 55.7
CDE02G3279 Ceratophyllum demersum HOM05D000901 ORTHO05D128872 1.7e-06 57.4 38 65.8


User provided reference genes

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