Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 6.3e-100 367.5 189 100.0
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.4e-69 265.0 177 78.0
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 9.2e-67 257.3 185 73.0
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.7e-66 255.8 185 72.4
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 5.0e-65 251.5 185 70.8
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 1.1e-64 250.4 176 74.4
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 3.3e-64 248.8 168 78.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 9.5e-64 247.3 164 79.9
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 2.1e-63 246.1 164 76.8
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 3.6e-63 245.4 164 78.7
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 4.7e-63 245.0 164 78.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.2e-63 244.6 167 76.6
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 8.0e-63 244.2 167 76.6
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.4e-62 243.4 164 77.4
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 3.1e-62 242.3 167 75.4
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 4.0e-62 241.9 164 75.6
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 4.0e-62 241.9 164 74.4
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 6.8e-62 241.1 164 75.6
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 8.9e-62 240.7 164 75.0
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.2e-61 240.4 164 75.6
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.2e-61 240.4 164 76.8
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.6e-61 239.2 180 66.7
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.6e-61 239.2 164 75.0
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.4e-61 238.4 164 76.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.2e-60 236.1 168 72.0
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.9e-60 235.7 167 73.1
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.9e-60 235.7 164 73.8
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 8.3e-60 234.2 164 73.2
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.1e-59 233.8 164 73.2
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.9e-59 233.0 164 72.6
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 2.4e-59 232.6 164 73.2
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 3.2e-59 232.3 164 72.0
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 9.2e-59 230.7 167 72.5
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.6e-58 229.9 164 70.7
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.1e-58 229.6 164 70.7
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.7e-58 229.2 164 70.1
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.7e-58 229.2 168 71.4
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 3.5e-58 228.8 175 69.1
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 4.6e-58 228.4 167 70.7
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 6.0e-58 228.0 164 70.7
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 7.8e-58 227.6 164 73.8
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.0e-57 227.3 164 74.4
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.3e-57 226.1 177 65.5
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.9e-57 225.3 164 70.7
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 3.9e-57 225.3 167 70.1
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 5.1e-57 224.9 164 70.1
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 5.1e-57 224.9 167 73.7
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 5.1e-57 224.9 167 73.7
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 5.1e-57 224.9 168 70.2
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.5e-56 223.4 168 69.6
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.9e-56 223.0 164 69.5
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 2.5e-56 222.6 164 72.0
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 7.3e-56 221.1 167 69.5
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 9.5e-56 220.7 164 68.3
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.2e-55 220.3 164 68.9
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.6e-55 219.9 176 65.3
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 2.1e-55 219.5 164 68.9
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 6.2e-55 218.0 164 69.5
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 6.2e-55 218.0 164 68.9
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.8e-54 216.5 167 68.3
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 5.2e-54 214.9 171 64.9
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 8.9e-54 214.2 165 69.7
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.2e-53 213.8 167 67.7
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.2e-53 213.8 164 65.9
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.6e-53 212.6 164 67.7
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.4e-53 212.2 164 68.9
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.8e-53 211.5 164 67.1
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 7.5e-53 211.1 167 66.5
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 9.9e-53 210.7 164 68.9
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 3.7e-52 208.8 164 67.1
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 3.7e-52 208.8 164 65.9
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.7e-52 208.8 164 67.1
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 4.9e-52 208.4 164 68.3
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.9e-52 208.4 167 66.5
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 6.4e-52 208.0 165 67.3
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 6.4e-52 208.0 167 66.5
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 8.3e-52 207.6 164 68.3
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.1e-51 207.2 164 67.7
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 7.1e-51 204.5 164 67.7
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 7.1e-51 204.5 164 67.7
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 9.2e-51 204.1 164 67.1
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.6e-50 203.4 164 66.5
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 2.7e-50 202.6 164 66.5
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-50 202.6 168 65.5
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 4.6e-50 201.8 164 65.9
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 6.0e-50 201.4 141 75.9
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 6.0e-50 201.4 170 65.3
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 7.8e-50 201.1 164 65.9
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 7.8e-50 201.1 164 65.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.0e-49 200.7 164 64.0
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.7e-49 199.9 165 62.4
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.7e-49 199.9 169 64.5
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-49 199.5 168 64.9
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-49 199.5 168 64.9
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 2.3e-49 199.5 164 62.2
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.9e-49 198.7 168 64.9
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.5e-48 196.8 164 64.6
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.9e-48 196.4 164 64.6
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.3e-48 195.3 168 63.1
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 5.6e-48 194.9 164 61.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.2e-47 193.7 189 58.2
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-47 193.7 168 62.5
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 8.1e-47 191.0 164 64.0
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 4.0e-46 188.7 164 62.2
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 5.2e-46 188.3 160 60.6
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.8e-46 188.0 135 72.6
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 2.0e-45 186.4 164 62.8
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 2.2e-44 183.0 168 56.5
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.9e-44 182.6 164 61.6
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 3.8e-44 182.2 168 56.5
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 4.9e-44 181.8 167 58.1
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.1e-43 180.6 136 69.1
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 7.1e-43 177.9 141 68.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.5e-42 175.6 168 55.4
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.3e-41 173.7 168 54.8
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.0e-41 172.6 145 64.1
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.0e-41 172.6 168 54.8
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 3.9e-41 172.2 168 54.8
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.5e-40 169.5 135 66.7
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 9.9e-37 157.5 164 53.7
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.1e-35 154.1 164 53.0
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.1e-35 154.1 164 54.3
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 7.1e-35 151.4 167 50.3
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 1.6e-34 150.2 186 46.8
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 7.8e-34 147.9 120 63.3
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.5e-32 142.9 162 51.2
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.2e-27 125.9 162 48.8
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.5e-26 122.5 72 80.6
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 5.1e-25 118.6 226 36.7
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 5.6e-24 115.2 81 70.4
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.6e-23 113.6 108 50.9
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.1e-23 113.2 141 42.6
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.1e-22 110.9 141 42.6
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.8e-22 110.2 67 79.1
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.7e-20 103.6 154 39.6
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 1.6e-18 97.1 179 35.2
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.5e-18 95.9 216 32.9
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 9.3e-11 71.2 54 75.9
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.7e-10 69.7 59 66.1
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 2.8e-07 59.7 48 68.8


User provided reference genes

Program Settings