Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 0.0e+00 1989.2 1216 100.0
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 6.1e-281 971.5 1250 58.7
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-271 939.9 1248 56.0
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-271 939.9 1248 56.0
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 2.0e-271 939.9 1248 56.0
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 2.4e-240 836.6 1223 53.6
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 3.9e-235 819.3 1225 52.2
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.4e-200 704.5 749 56.6
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 3.2e-197 693.3 1245 46.3
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.6e-178 630.6 681 59.8
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 2.2e-177 627.5 1292 43.3
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 2.7e-175 620.5 1232 43.5
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.9e-174 617.1 1346 46.8
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 5.6e-165 586.3 1258 44.8
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.8e-163 581.3 1334 44.6
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.4e-155 555.1 1296 45.3
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 3.2e-152 543.9 1271 41.4
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 6.6e-150 536.2 1313 42.7
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.4e-144 518.5 665 51.6
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 7.3e-133 479.6 1234 40.9
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 1.1e-131 475.7 1220 39.9
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 1.4e-128 465.3 1115 42.3
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 3.6e-124 450.7 1236 39.3
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 6.2e-124 449.9 1229 40.4
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 4.0e-123 447.2 1207 38.8
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.4e-120 438.0 1192 40.4
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.3e-118 432.2 1207 37.9
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 6.7e-118 429.9 1201 39.8
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 1.6e-116 425.2 1269 37.4
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 8.1e-116 422.9 1201 36.5
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 2.4e-115 421.4 1218 41.1
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 2.1e-108 398.3 1272 36.9
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 2.0e-106 391.7 1261 41.0
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 2.6e-106 391.3 1250 38.1
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 2.2e-105 388.3 1254 38.8
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 8.4e-105 386.3 1241 34.9
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.4e-104 385.6 1152 38.5
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.6e-103 382.1 1241 34.6
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 3.5e-103 380.9 1272 36.7
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.6e-103 380.6 1237 35.8
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.8e-102 378.6 831 43.4
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 6.7e-102 376.7 1273 37.2
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 8.7e-102 376.3 1085 38.6
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 1.6e-100 372.1 1236 36.4
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 1.8e-99 368.6 743 47.6
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.2e-96 357.8 937 39.4
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.2e-95 355.9 915 40.2
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 4.6e-95 354.0 1238 37.9
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 6.1e-95 353.6 1218 33.4
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.0e-94 352.8 1195 30.5
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.1e-94 350.5 472 49.4
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.3e-92 345.9 715 41.0
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 6.9e-91 340.1 1249 33.9
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.0e-90 338.6 1208 37.6
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 3.4e-90 337.8 938 40.2
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 2.9e-89 334.7 738 44.2
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 6.5e-89 333.6 295 69.2
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.1e-87 328.6 1183 33.1
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 2.1e-87 328.6 947 39.0
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 6.1e-87 327.0 234 71.4
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 7.9e-87 326.6 753 39.6
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 3.9e-86 324.3 235 70.2
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 4.4e-85 320.9 701 49.8
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 8.2e-84 316.6 889 39.5
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 1.4e-83 315.8 1211 32.4
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 5.0e-81 307.4 290 60.0
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 1.4e-80 305.8 1235 36.0
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 4.2e-80 304.3 1203 37.6
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 2.1e-79 302.0 1224 37.0
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 4.7e-79 300.8 1260 37.1
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.8e-78 298.9 233 63.5
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 1.5e-77 295.8 192 74.0
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 3.3e-77 294.7 1224 31.9
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 7.4e-77 293.5 162 84.6
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 9.7e-77 293.1 1278 36.6
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 1.7e-76 292.4 1156 41.1
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 5.3e-75 287.3 222 65.3
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 7.0e-75 287.0 1128 38.2
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 3.8e-73 281.2 904 38.9
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 4.2e-72 277.7 1279 36.3
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 7.2e-72 276.9 161 78.3
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 1.6e-71 275.8 161 78.9
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 1.4e-70 272.7 161 77.6
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 5.3e-67 260.8 779 42.5
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 5.9e-66 257.3 754 42.2
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 5.0e-65 254.2 1195 36.0
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 8.5e-65 253.4 1216 36.9
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.2e-63 249.6 140 79.3
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 4.0e-62 244.6 1142 33.6
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 3.1e-59 235.0 232 51.3
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 2.9e-57 228.4 1308 35.2
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 2.9e-57 228.4 859 32.9
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.1e-51 208.4 101 92.1
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 2.0e-50 205.7 744 31.2
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 1.1e-48 199.9 161 58.4
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 1.6e-47 196.1 173 61.8
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 1.6e-47 196.1 1230 32.4
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 1.0e-46 193.4 103 78.6
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 3.0e-46 191.8 154 58.4
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 1.5e-45 189.5 760 30.1
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 4.9e-44 184.5 749 40.1
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 1.9e-40 172.6 188 49.5
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 4.7e-39 167.9 772 31.7
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 4.0e-38 164.9 179 46.9
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 1.6e-34 152.9 177 47.5
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 4.6e-34 151.4 110 60.0
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.3e-33 149.1 77 85.7
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.3e-33 149.1 77 85.7
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 1.1e-32 146.7 770 29.2
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 9.9e-29 133.7 706 28.3
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.1e-22 113.6 94 61.7
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 2.4e-22 112.5 750 29.5
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 2.0e-21 109.4 1070 34.3
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 5.6e-16 91.3 142 30.3
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 1.2e-15 90.1 140 27.9
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 2.1e-15 89.4 131 33.6
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 2.4e-14 85.9 114 35.1
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 5.2e-14 84.7 115 33.0
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 9.0e-14 84.0 114 33.3
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 3.4e-13 82.0 168 33.3
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 3.8e-12 78.6 363 31.1
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 6.6e-09 67.8 92 44.6
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 7.3e-08 64.3 43 65.1


User provided reference genes

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