Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049870 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 3.7e-30 134.4 77 100.0
CSS0038829 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 5.3e-29 130.6 77 96.1
CSS0028294 Camellia sinensis var. sinensis HOM05D001298 ORTHO05D001110 3.4e-12 74.7 76 57.9
Actinidia40157 Actinidia chinensis HOM05D001298 ORTHO05D001110 1.4e-10 69.3 70 55.7
Rhsim04G0203600 Rhododendron simsii HOM05D001298 ORTHO05D001110 5.5e-10 67.4 70 57.1
unitig_749.g13402 Utricularia gibba HOM05D001298 ORTHO05D001110 5.5e-10 67.4 70 54.3
DCAR_027179 Daucus carota HOM05D001298 ORTHO05D001110 1.6e-09 65.9 70 55.7
Lj6A573T93 Lonicera japonica HOM05D001298 ORTHO05D001110 2.1e-09 65.5 70 55.7
Lj6A576T58 Lonicera japonica HOM05D001298 ORTHO05D001110 2.1e-09 65.5 70 55.7
TAR636G0563 Trochodendron aralioides HOM05D001298 ORTHO05D001110 2.7e-09 65.1 70 55.7
Solyc01g079820.3 Solanum lycopersicum HOM05D001298 ORTHO05D001110 1.4e-08 62.8 70 54.3
Sopen01g031580 Solanum pennellii HOM05D001298 ORTHO05D001110 1.4e-08 62.8 70 54.3
PGSC0003DMG400008994 Solanum tuberosum HOM05D001298 ORTHO05D001110 1.4e-08 62.8 70 54.3
Migut.N00159 Erythranthe guttata HOM05D001298 ORTHO05D001110 1.8e-08 62.4 70 52.9
RcHm_v2.0_Chr4g0417421 Rosa chinensis HOM05D001298 ORTHO05D001110 1.8e-08 62.4 70 54.3
SGA_v2.0_scaffold166G38365 Striga asiatica HOM05D002130 ORTHO05D001110 1.8e-08 62.4 70 52.9
COL.COLO4_20848 Corchorus olitorius HOM05D001298 ORTHO05D001110 2.3e-08 62.0 70 54.3
Dinv44494 Davidia involucrata HOM05D001298 ORTHO05D001110 2.3e-08 62.0 70 54.3
Nn4g26226 Nelumbo nucifera HOM05D001298 ORTHO05D001110 2.3e-08 62.0 70 52.9
Ah.09g228400 Amaranthus hybridus HOM05D001298 ORTHO05D001110 3.0e-08 61.6 73 50.7
EL10As3g23297 Beta vulgaris HOM05D001298 ORTHO05D001110 3.0e-08 61.6 70 52.9
CAN.G69.21 Capsicum annuum HOM05D001298 ORTHO05D001110 3.0e-08 61.6 70 52.9
FvH4_4g14840 Fragaria vesca HOM05D001298 ORTHO05D001110 3.9e-08 61.2 70 54.3
FAN07G2278 Fragaria x ananassa HOM05D001298 ORTHO05D001110 3.9e-08 61.2 70 54.3
FAN12G0254 Fragaria x ananassa HOM05D001298 ORTHO05D001110 3.9e-08 61.2 70 54.3
FAN17G1335 Fragaria x ananassa HOM05D001298 ORTHO05D001110 3.9e-08 61.2 70 54.3
GSVIVG01017908001 Vitis vinifera HOM05D001298 ORTHO05D001110 3.9e-08 61.2 70 51.4
AUR62038194 Chenopodium quinoa HOM05D001298 ORTHO05D001110 5.1e-08 60.8 70 52.9
arahy.Tifrunner.gnm1.ann1.FJN7R5 Arachis hypogaea HOM05D001298 ORTHO05D001110 6.7e-08 60.5 70 54.3
Aqoxy2G03300 Aquilegia oxysepala HOM05D001298 ORTHO05D001110 8.8e-08 60.1 70 51.4
RcHm_v2.0_Chr4g0417491 Rosa chinensis HOM05D001298 ORTHO05D001110 1.1e-07 59.7 70 52.9
MSTRG.24754 Avicennia marina HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 51.4
AUR62038066 Chenopodium quinoa HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 51.4
Ciclev10005822m.g Citrus clementina HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 51.4
Cc03_g03290 Coffea canephora HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 50.0
Gohir.A10G124400 Gossypium hirsutum HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 52.9
Gohir.D10G141900 Gossypium hirsutum HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 52.9
Nitab4.5_0000630g0060 Nicotiana tabacum HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 52.9
Nitab4.5_0000968g0010 Nicotiana tabacum HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 52.9
SalBow5G2912 Salvia bowleyana HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 51.4
SalBow5G3279 Salvia bowleyana HOM05D001298 ORTHO05D001110 1.5e-07 59.3 70 51.4
arahy.Tifrunner.gnm1.ann1.2N9FFP Arachis hypogaea HOM05D001298 ORTHO05D001110 2.0e-07 58.9 70 52.9
Medtr2g022660 Medicago truncatula HOM05D001298 ORTHO05D001110 2.0e-07 58.9 70 52.9
Psat1g182960 Pisum sativum HOM05D001298 ORTHO05D001110 2.0e-07 58.9 70 51.4
TPR.G7650 Trifolium pratense HOM05D001298 ORTHO05D001110 2.0e-07 58.9 70 52.9
Atru.chr4.2534 Acer truncatum HOM05D001298 ORTHO05D001110 2.6e-07 58.5 70 50.0
Ca_00630_v3 Cicer arietinum L. HOM05D001298 ORTHO05D001110 2.6e-07 58.5 70 51.4
Glyma.13G207000 Glycine max HOM05D001298 ORTHO05D001110 2.6e-07 58.5 70 52.9
Glyma.15G105600 Glycine max HOM05D001298 ORTHO05D001110 2.6e-07 58.5 70 52.9
Lj6g0011312 Lotus japonicus HOM05D001298 ORTHO05D001110 2.6e-07 58.5 70 52.9
Phvul.006G151800 Phaseolus vulgaris HOM05D001298 ORTHO05D001110 2.6e-07 58.5 70 52.9
TAR365G0327 Trochodendron aralioides HOM05D001298 ORTHO05D001110 2.6e-07 58.5 70 51.4
VMungo0540G1628 Vigna mungo HOM05D001298 ORTHO05D001110 2.6e-07 58.5 70 52.9
Peaxi162Scf01336g00018 Petunia axillaris HOM05D001298 ORTHO05D001110 3.3e-07 58.2 70 52.9
Sed0023718 Sechium edule HOM05D001298 ORTHO05D001110 3.3e-07 58.2 76 44.7
Sc19g0004410 Simmondsia chinensis HOM05D001298 ORTHO05D001110 3.3e-07 58.2 70 51.4
Duzib151G1052 Durio zibethinus HOM05D001298 ORTHO05D001110 4.4e-07 57.8 70 51.4
Gorai.011G158200 Gossypium raimondii HOM05D001298 ORTHO05D001110 4.4e-07 57.8 70 51.4
Lalb_Chr18g0056191 Lupinus albus HOM05D001298 ORTHO05D001110 4.4e-07 57.8 70 50.0
arahy.Tifrunner.gnm1.ann1.QS5V0D Arachis hypogaea HOM05D001298 ORTHO05D001110 5.7e-07 57.4 70 52.9
Hma1.2p1_0511F.1_g168990 Hydrangea macrophylla HOM05D001298 ORTHO05D001110 5.7e-07 57.4 70 51.4
MD13G1185800 Malus domestica HOM05D001298 ORTHO05D001110 5.7e-07 57.4 70 50.0
MD16G1186600 Malus domestica HOM05D001298 ORTHO05D001110 5.7e-07 57.4 70 50.0
Manes.03G182500 Manihot esculenta HOM05D001298 ORTHO05D001110 5.7e-07 57.4 70 50.0
PSO170G6057 Papaver somniferum HOM05D001298 ORTHO05D001110 5.7e-07 57.4 76 46.1
Thecc.04G225000 Theobroma cacao HOM05D001298 ORTHO05D001110 5.7e-07 57.4 70 51.4
Prupe.1G153400 Prunus persica HOM05D001298 ORTHO05D001110 7.4e-07 57.0 70 51.4
TWI53G1300 Tripterygium wilfordii HOM05D001298 ORTHO05D001110 7.4e-07 57.0 70 50.0
Potri.019G024000 Populus trichocarpa HOM05D001298 ORTHO05D001110 1.3e-06 56.2 70 50.0
Sabra19G0033900 Salix brachista HOM05D001298 ORTHO05D001110 1.3e-06 56.2 70 50.0
CANSAT78G0642 Cannabis sativa HOM05D001298 ORTHO05D001110 1.7e-06 55.8 70 48.6
Cfa009359 Carpinus fangiana HOM05D001298 ORTHO05D001110 2.2e-06 55.5 70 50.0
CDE02G1984 Ceratophyllum demersum HOM05D001298 ORTHO05D001110 2.2e-06 55.5 76 44.7
Haze_12404 Corylus avellana HOM05D001298 ORTHO05D001110 2.2e-06 55.5 70 50.0
MELO3C021410.2 Cucumis melo HOM05D001298 ORTHO05D001110 2.8e-06 55.1 70 48.6
CsaV3_6G015110 Cucumis sativus L. HOM05D001298 ORTHO05D001110 2.8e-06 55.1 70 48.6
Eucgr.B01112 Eucalyptus grandis HOM05D001298 ORTHO05D001110 2.8e-06 55.1 70 50.0
Os01g0266600 Oryza sativa ssp. japonica HOM05D001298 ORTHO05D001110 2.8e-06 55.1 70 47.1
PSO302G0118 Papaver somniferum HOM05D001298 ORTHO05D001110 2.8e-06 55.1 76 44.7
HanXRQChr12g0359601 Helianthus annuus HOM05D001298 ORTHO05D001110 3.7e-06 54.7 70 47.1
SEGI_26001 Sequoiadendron giganteum HOM05D001298 ORTHO05D001110 3.7e-06 54.7 70 47.1
Lsat_1_v5_gn_5_73880 Lactuca sativa HOM05D001298 ORTHO05D001110 4.8e-06 54.3 70 45.7
PGR142G2799 Punica granatum HOM05D001298 ORTHO05D001110 4.8e-06 54.3 70 50.0
AL3G16890 Arabidopsis lyrata HOM05D001298 ORTHO05D001110 6.3e-06 53.9 76 44.7
AT3G06050 Arabidopsis thaliana HOM05D001298 ORTHO05D001110 6.3e-06 53.9 76 44.7
Carub.0003s0549 Capsella rubella HOM05D001298 ORTHO05D001110 6.3e-06 53.9 76 44.7
CiPaw.02G093700 Carya illinoinensis HOM05D001298 ORTHO05D001110 6.3e-06 53.9 70 47.1
Aa31LG5G16540 Aethionema arabicum HOM05D001298 ORTHO05D001110 8.2e-06 53.5 76 44.7
BcaC05g30062 Brassica carinata HOM05D001298 ORTHO05D001110 8.2e-06 53.5 76 44.7
A05p41950 Brassica napus HOM05D001298 ORTHO05D001110 8.2e-06 53.5 76 44.7
C05p61200 Brassica napus HOM05D001298 ORTHO05D001110 8.2e-06 53.5 76 44.7
BolC5t34780H Brassica oleracea HOM05D001298 ORTHO05D001110 8.2e-06 53.5 76 44.7
BraA05t22917Z Brassica rapa HOM05D001298 ORTHO05D001110 8.2e-06 53.5 76 44.7
Oeu030325.1 Olea europaea HOM05D001298 ORTHO05D001110 8.2e-06 53.5 70 47.1
Phvul.006G151701 Phaseolus vulgaris HOM05D001298 ORTHO05D001110 8.2e-06 53.5 70 48.6


User provided reference genes

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