Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.2e-30 134.4 68 100.0
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.0e-28 129.4 68 95.6
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 8.8e-28 126.3 68 92.6
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.1e-25 119.4 65 92.3
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.4e-25 118.2 65 90.8
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.6e-24 114.8 80 77.5
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 5.5e-22 107.1 65 80.0
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.2e-21 105.9 65 78.5
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.6e-21 105.5 65 80.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.1e-21 105.1 65 78.5
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 2.1e-21 105.1 65 80.0
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.1e-21 105.1 65 78.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 78.5
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 78.5
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 78.5
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.7e-21 104.8 65 78.5
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 3.6e-21 104.4 65 76.9
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 3.6e-21 104.4 65 80.0
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 4.7e-21 104.0 65 78.5
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 4.7e-21 104.0 65 76.9
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 6.1e-21 103.6 65 78.5
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 6.1e-21 103.6 65 76.9
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 6.1e-21 103.6 63 77.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 6.1e-21 103.6 65 75.4
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 6.1e-21 103.6 65 75.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 6.1e-21 103.6 65 76.9
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 8.0e-21 103.2 65 76.9
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 8.0e-21 103.2 65 76.9
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 8.0e-21 103.2 65 78.5
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 8.0e-21 103.2 65 76.9
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 75.4
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 73.8
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 73.8
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 76.9
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 76.9
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 76.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.0e-20 102.8 65 75.4
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.0e-20 102.8 64 76.6
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.0e-20 102.8 64 76.6
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.0e-20 102.8 64 76.6
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.0e-20 102.8 64 78.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-20 102.4 65 75.4
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.4e-20 102.4 65 75.4
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-20 102.4 64 75.0
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.4e-20 102.4 65 75.4
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 1.4e-20 102.4 64 76.6
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.4e-20 102.4 64 78.1
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.8e-20 102.1 65 73.8
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.8e-20 102.1 65 73.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.8e-20 102.1 65 75.4
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.8e-20 102.1 65 75.4
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.8e-20 102.1 65 73.8
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.8e-20 102.1 65 75.4
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 76.9
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 75.4
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 76.9
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.3e-20 101.7 65 72.3
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 73.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 73.8
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 73.8
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 75.4
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 73.8
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 75.4
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 75.4
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 3.0e-20 101.3 65 72.3
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 75.4
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 75.4
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 73.8
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 76.9
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 76.9
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 75.4
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 73.8
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 73.8
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.0e-20 100.9 65 73.8
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.2e-20 100.5 65 76.9
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 5.2e-20 100.5 65 73.8
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 5.2e-20 100.5 65 76.9
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 6.8e-20 100.1 65 72.3
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 6.8e-20 100.1 65 72.3
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 6.8e-20 100.1 65 73.8
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 6.8e-20 100.1 64 75.0
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 6.8e-20 100.1 65 69.2
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 6.8e-20 100.1 64 75.0
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 8.8e-20 99.8 65 72.3
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 8.8e-20 99.8 64 75.0
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 8.8e-20 99.8 64 73.4
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 75.4
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.2e-19 99.4 65 73.8
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.5e-19 99.0 65 72.3
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 2.0e-19 98.6 65 70.8
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 2.0e-19 98.6 64 73.4
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.0e-19 98.6 65 72.3
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.0e-19 98.6 65 75.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.0e-19 98.6 65 72.3
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.6e-19 98.2 65 73.8
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 2.6e-19 98.2 65 70.8
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 2.6e-19 98.2 64 73.4
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.6e-19 98.2 65 72.3
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.6e-19 98.2 65 72.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 3.4e-19 97.8 65 70.8
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 3.4e-19 97.8 65 69.2
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.4e-19 97.8 65 75.4
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 4.4e-19 97.4 65 70.8
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-19 97.4 65 72.3
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 5.7e-19 97.1 65 70.8
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 5.7e-19 97.1 65 73.8
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 5.7e-19 97.1 65 72.3
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 5.7e-19 97.1 65 72.3
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 5.7e-19 97.1 65 70.8
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 5.7e-19 97.1 65 67.7
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 7.5e-19 96.7 65 70.8
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 9.7e-19 96.3 65 70.8
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.7e-19 96.3 65 72.3
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.7e-19 96.3 65 72.3
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.7e-19 96.3 65 72.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.7e-19 96.3 65 72.3
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.7e-19 96.3 65 72.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 9.7e-19 96.3 65 69.2
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.3e-18 95.9 64 70.3
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.3e-18 95.9 65 67.7
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-18 95.5 63 73.0
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.2e-18 95.1 65 67.7
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.8e-18 94.7 65 70.8
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.8e-18 94.7 65 70.8
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.8e-18 94.7 65 70.8
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 3.7e-18 94.4 64 70.3
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 6.3e-18 93.6 64 67.2
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 6.3e-18 93.6 65 72.3
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 8.3e-18 93.2 65 64.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 8.3e-18 93.2 65 69.2
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.8e-17 92.0 65 69.2
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.1e-17 91.3 65 69.2
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.1e-17 91.3 64 62.5
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 4.1e-17 90.9 65 70.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 5.3e-17 90.5 64 67.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 5.3e-17 90.5 65 61.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 5.3e-17 90.5 64 70.3
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 9.1e-17 89.7 65 61.5
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.6e-16 89.0 65 60.0
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.0e-16 88.6 65 69.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.7e-16 88.2 65 63.1
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 5.9e-16 87.0 65 67.7
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.7e-16 86.7 63 66.7
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 7.7e-16 86.7 65 69.2
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.7e-15 85.5 65 63.1
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 2.2e-15 85.1 65 63.1
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 6.5e-15 83.6 65 58.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 4.7e-13 77.4 58 67.2
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.7e-13 77.4 65 56.9
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.0e-12 76.3 65 55.4
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 8.8e-12 73.2 42 76.2
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.3e-07 59.3 61 52.5
Zm00001eb170120 Zea mays HOM05D000137 ORTHO05D014725 1.1e-06 56.2 42 61.9
Zm00001eb388940 Zea mays HOM05D004043 ORTHO05D002193 1.1e-06 56.2 42 61.9


User provided reference genes

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