Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.2e-78 295.0 150 100.0
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.5e-67 259.6 150 84.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.3e-67 258.5 150 84.0
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 3.6e-66 255.0 150 84.7
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 3.1e-65 251.9 150 84.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 4.0e-65 251.5 150 84.0
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 4.9e-63 244.6 150 81.3
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 9.2e-62 240.4 150 77.3
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 4.6e-61 238.0 150 76.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 7.8e-61 237.3 150 78.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.1e-60 234.6 150 75.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 5.1e-60 234.6 150 75.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.1e-60 234.6 150 75.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 8.6e-60 233.8 148 75.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 7.3e-59 230.7 150 74.7
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.2e-58 229.9 148 74.3
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 1.2e-58 229.9 150 74.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 75.3
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 4.7e-58 228.0 150 72.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 6.2e-58 227.6 147 73.5
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 2.4e-57 225.7 150 72.0
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 3.1e-57 225.3 148 73.0
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 73.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 6.8e-57 224.2 150 71.3
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.5e-56 223.0 150 72.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.5e-56 223.0 147 72.8
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 2.0e-56 222.6 148 71.6
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 5.8e-56 221.1 147 70.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 70.0
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 70.0
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 70.0
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.9e-55 218.8 150 70.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 6.4e-55 217.6 150 73.3
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 69.3
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 68.7
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 68.0
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 70.0
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 5.4e-54 214.5 151 68.2
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 5.4e-54 214.5 149 68.5
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 5.4e-54 214.5 148 69.6
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 67.3
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 71.3
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 7.1e-54 214.2 150 70.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 67.3
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 67.3
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 70.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.6e-53 213.0 150 68.0
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 66.7
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 2.7e-53 212.2 150 67.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 66.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 4.6e-53 211.5 146 69.2
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 4.6e-53 211.5 150 67.3
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 68.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 6.0e-53 211.1 150 68.0
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 7.8e-53 210.7 147 67.3
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 7.8e-53 210.7 147 68.0
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 68.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.0e-52 210.3 149 66.4
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 66.9
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 70.0
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 68.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 66.0
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.3e-52 209.9 148 70.9
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.3e-52 209.9 147 68.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 65.3
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 65.3
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.7e-52 209.5 222 53.2
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 1.7e-52 209.5 143 69.2
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 65.3
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 66.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 3.0e-52 208.8 150 64.7
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 67.3
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 68.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 68.0
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 6.6e-52 207.6 150 67.3
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 66.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 64.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.5e-51 206.5 147 66.7
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 2.5e-51 205.7 148 68.9
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 9.6e-51 203.8 148 62.8
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 9.6e-51 203.8 147 66.0
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.2e-50 203.4 148 64.9
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.8e-50 202.2 157 63.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 4.7e-50 201.4 148 66.9
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.1e-49 200.3 162 60.5
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.1e-49 200.3 170 62.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 3.1e-49 198.7 150 64.7
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.0e-49 198.4 147 66.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 5.2e-49 198.0 160 61.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 5.2e-49 198.0 161 59.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 9.0e-49 197.2 143 68.5
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.0e-49 197.2 143 68.5
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.0e-49 197.2 143 68.5
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.5e-48 196.4 145 67.6
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.5e-48 196.4 145 67.6
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.0e-48 196.1 143 67.8
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.6e-48 195.7 147 63.9
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.6e-48 195.7 143 67.8
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 4.4e-48 194.9 149 62.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.4e-48 194.9 140 62.9
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 5.8e-48 194.5 150 63.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 7.6e-48 194.1 161 60.9
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 7.6e-48 194.1 149 61.7
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.3e-47 193.4 181 55.8
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.7e-47 193.0 148 60.8
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.2e-47 192.6 148 66.2
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 2.9e-47 192.2 193 56.0
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 3.8e-47 191.8 149 63.1
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 61.1
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 62.4
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.4e-47 191.0 152 62.5
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 8.4e-47 190.7 140 65.0
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.9e-46 189.5 149 61.1
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 1.9e-46 189.5 148 64.9
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 4.2e-46 188.3 140 61.4
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 7.1e-46 187.6 149 60.4
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 9.3e-46 187.2 134 67.9
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 58.4
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.6e-45 186.4 149 59.7
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 2.1e-45 186.0 149 59.7
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 2.7e-45 185.7 149 59.7
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.0e-44 183.7 149 59.1
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.3e-44 183.3 144 59.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 3.0e-44 182.2 150 56.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 3.0e-44 182.2 150 56.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.6e-44 181.0 144 59.7
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.5e-43 179.9 144 56.9
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-42 176.8 151 55.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.3e-42 176.8 143 60.8
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.6e-42 176.4 143 56.6
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.6e-42 176.4 143 56.6
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 3.6e-42 175.3 144 56.2
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.8e-42 174.9 144 54.9
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.8e-41 172.9 143 55.9
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.0e-41 170.6 143 56.6
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 9.0e-41 170.6 141 61.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 3.2e-38 162.2 105 70.5
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 3.2e-38 162.2 105 70.5
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-35 152.5 151 55.6
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 6.2e-34 147.9 149 49.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 2.4e-33 146.0 151 52.3
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 6.9e-33 144.4 151 49.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.5e-32 143.3 133 57.1
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 7.6e-32 141.0 89 73.0
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.3e-31 140.2 135 54.1
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.3e-31 140.2 135 54.1
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.3e-31 140.2 89 77.5
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 2.2e-31 139.4 105 62.9
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 2.9e-31 139.0 99 66.7
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.1e-30 137.1 149 47.7
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.1e-30 137.1 89 73.0
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.2e-29 133.7 145 49.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 2.1e-29 132.9 103 63.1
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 4.8e-26 121.7 144 45.1
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 3.4e-24 115.5 100 54.0
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 4.9e-23 111.7 130 36.2
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 4.9e-23 111.7 149 42.3
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.6e-21 106.7 143 35.7
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 2.1e-21 106.3 91 50.5
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 2.7e-21 105.9 82 57.3
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.8e-20 103.2 138 36.2
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.0e-20 102.4 103 48.5
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.7e-19 97.4 152 33.6
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 3.1e-17 92.4 144 39.6
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 5.9e-16 88.2 102 46.1
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 2.2e-15 86.3 72 58.3
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.4e-14 83.6 107 30.8
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 3.9e-12 75.5 131 29.0
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 8.8e-12 74.3 52 65.4
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.1e-11 73.9 87 43.7
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.5e-11 72.8 81 53.1
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.3e-10 70.5 135 27.4
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 5.3e-09 65.1 39 69.2
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.4e-08 62.4 46 58.7
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 3.4e-08 62.4 134 26.1
PRCOL_00002126 Prasinoderma coloniale HOM05D003922 ORTHO05D004492 2.5e-06 56.2 109 33.9


User provided reference genes

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