Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 7.4e-62 240.4 120 100.0
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 2.5e-25 119.0 72 79.2
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 1.0e-23 113.6 81 74.1
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 2.0e-22 109.4 72 73.6
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 4.1e-20 101.7 67 77.6
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 4.1e-20 101.7 71 76.1
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 4.1e-20 101.7 71 76.1
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 3.5e-19 98.6 70 67.1
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 3.5e-19 98.6 71 64.8
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 3.5e-19 98.6 70 67.1
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 7.7e-19 97.4 70 67.1
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 7.7e-19 97.4 68 69.1
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 2.2e-18 95.9 70 65.7
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 2.2e-18 95.9 70 64.3
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 2.2e-18 95.9 70 67.1
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 2.9e-18 95.5 70 64.3
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 2.9e-18 95.5 70 70.0
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 3.8e-18 95.1 75 60.0
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.1e-17 93.6 71 66.2
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 1.1e-17 93.6 70 60.0
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 1.5e-17 93.2 70 65.7
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 2.5e-17 92.4 75 58.7
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 3.2e-17 92.0 92 50.0
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 4.2e-17 91.7 70 62.9
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 5.5e-17 91.3 70 62.9
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 7.2e-17 90.9 70 61.4
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 7.2e-17 90.9 70 64.3
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 9.4e-17 90.5 69 63.8
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 9.4e-17 90.5 70 64.3
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 9.4e-17 90.5 69 63.8
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 9.4e-17 90.5 69 63.8
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 9.4e-17 90.5 70 62.9
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 9.4e-17 90.5 70 64.3
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 9.4e-17 90.5 70 64.3
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 1.2e-16 90.1 70 60.0
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.2e-16 90.1 73 58.9
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 1.6e-16 89.7 70 64.3
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.6e-16 89.7 71 57.7
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 1.6e-16 89.7 71 59.2
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.7e-16 89.0 69 62.3
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 2.7e-16 89.0 70 61.4
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 2.7e-16 89.0 70 61.4
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 4.7e-16 88.2 70 64.3
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.4e-15 86.7 70 60.0
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.4e-15 86.7 70 57.1
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.4e-15 86.7 71 60.6
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 1.4e-15 86.7 71 66.2
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.4e-15 86.7 70 58.6
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.4e-15 86.7 70 58.6
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 2.3e-15 85.9 73 58.9
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 5.2e-15 84.7 70 62.9
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 5.2e-15 84.7 70 62.9
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 5.2e-15 84.7 70 62.9
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 8.8e-15 84.0 70 55.7
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.2e-14 83.6 70 60.0
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 2.0e-14 82.8 73 53.4
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 3.4e-14 82.0 70 52.9
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 3.4e-14 82.0 73 53.4
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 3.4e-14 82.0 71 57.7
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 7.5e-14 80.9 71 50.7
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 7.5e-14 80.9 71 50.7
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 7.5e-14 80.9 71 50.7
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 1.7e-13 79.7 70 55.7
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.7e-13 79.7 71 54.9
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.7e-13 79.7 71 53.5
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 4.8e-13 78.2 67 53.7
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 1.4e-12 76.6 71 53.5
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 2.4e-12 75.9 71 53.5
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 3.1e-12 75.5 71 53.5
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 4.1e-12 75.1 74 55.4
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 5.4e-12 74.7 71 52.1
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 5.4e-12 74.7 71 52.1
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 7.0e-12 74.3 71 54.9
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 9.1e-12 73.9 50 74.0
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.2e-11 73.6 71 52.1
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 1.6e-11 73.2 71 50.7
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 1.7e-10 69.7 63 50.8
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 2.3e-10 69.3 66 51.5
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.3e-10 69.3 72 50.0
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.3e-10 69.3 71 46.5
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 2.9e-10 68.9 72 48.6
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 2.9e-10 68.9 71 46.5
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 3.8e-10 68.6 72 51.4
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 3.8e-10 68.6 64 46.9
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 8.6e-10 67.4 71 46.5
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 8.6e-10 67.4 71 47.9
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.1e-09 67.0 72 48.6
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 1.1e-09 67.0 72 48.6
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.5e-09 66.6 64 45.3
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 1.9e-09 66.2 72 47.2
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.9e-09 66.2 64 45.3
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 3.3e-09 65.5 64 43.8
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 3.3e-09 65.5 70 54.3
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 3.3e-09 65.5 70 47.1
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 4.2e-09 65.1 69 42.0
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 5.5e-09 64.7 70 48.6
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 5.5e-09 64.7 72 47.2
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 5.5e-09 64.7 72 48.6
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 7.2e-09 64.3 72 45.8
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 7.2e-09 64.3 64 54.7
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 9.5e-09 63.9 69 42.0
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 1.2e-08 63.5 71 43.7
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 1.6e-08 63.2 71 42.3
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.6e-08 63.2 64 54.7
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 2.1e-08 62.8 69 46.4
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 2.1e-08 62.8 67 40.3
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 4.7e-08 61.6 72 44.4
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 4.7e-08 61.6 70 47.1
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 8.0e-08 60.8 75 48.0
Mapoly0001s0365 Marchantia polymorpha HOM05D000336 ORTHO05D000593 8.0e-08 60.8 79 34.2
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.8e-07 59.7 61 50.8
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 3.0e-07 58.9 72 36.1
AagrBONN_evm.TU.Sc2ySwM_117.2756 Anthoceros agrestis HOM05D000336 ORTHO05D000593 6.8e-07 57.8 97 33.0
PGSC0003DMG400030660 Solanum tuberosum HOM05D000336 ORTHO05D000593 6.8e-07 57.8 72 40.3
Mapoly0042s0064 Marchantia polymorpha HOM05D000336 ORTHO05D000593 8.9e-07 57.4 79 35.4
Solyc02g091660.3 Solanum lycopersicum HOM05D000336 ORTHO05D000593 1.2e-06 57.0 72 37.5
Migut.M00249 Erythranthe guttata HOM05D000336 ORTHO05D000593 1.5e-06 56.6 88 38.6
Potri.001G376400 Populus trichocarpa HOM05D000336 ORTHO05D000593 1.5e-06 56.6 62 45.2
Sopen02g036270 Solanum pennellii HOM05D000336 ORTHO05D000593 1.5e-06 56.6 70 37.1
arahy.Tifrunner.gnm1.ann1.90FR5C Arachis hypogaea HOM05D000336 ORTHO05D002705 2.6e-06 55.8 77 32.5
arahy.Tifrunner.gnm1.ann1.AFBY4F Arachis hypogaea HOM05D000336 ORTHO05D002705 2.6e-06 55.8 77 32.5
HanXRQChr17g0565331 Helianthus annuus HOM05D000336 ORTHO05D000593 2.6e-06 55.8 85 40.0
Lsat_1_v5_gn_4_27481 Lactuca sativa HOM05D000336 ORTHO05D000593 2.6e-06 55.8 72 40.3
Nitab4.5_0002135g0040 Nicotiana tabacum HOM05D000336 ORTHO05D000593 2.6e-06 55.8 72 38.9
Potri.011G096400 Populus trichocarpa HOM05D000336 ORTHO05D000593 2.6e-06 55.8 80 40.0
Hund00980 Selenicereus undatus HOM05D000336 ORTHO05D000593 2.6e-06 55.8 61 44.3
PSO170G4562 Papaver somniferum HOM05D000336 ORTHO05D000593 3.4e-06 55.5 72 40.3
PSO210G4536 Papaver somniferum HOM05D000336 ORTHO05D000593 3.4e-06 55.5 72 40.3
Nitab4.5_0000291g0050 Nicotiana tabacum HOM05D000336 ORTHO05D000593 4.4e-06 55.1 72 38.9
Sc12g0003430 Simmondsia chinensis HOM05D000336 ORTHO05D000593 4.4e-06 55.1 72 41.7
GSVIVG01014233001 Vitis vinifera HOM05D000336 ORTHO05D000593 4.4e-06 55.1 61 42.6
ECA234G4659 Erigeron canadensis HOM05D000336 ORTHO05D000593 5.7e-06 54.7 72 40.3
Sabra11G0092500 Salix brachista HOM05D000336 ORTHO05D000593 5.7e-06 54.7 72 38.9
SGA_v2.0_scaffold9G04803 Striga asiatica HOM05D000336 ORTHO05D000593 5.7e-06 54.7 72 38.9
THA.LOC104798515 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 5.7e-06 54.7 87 39.1
EL10Ac9g20871 Beta vulgaris HOM05D000336 ORTHO05D000593 7.5e-06 54.3 61 44.3
AUR62042314 Chenopodium quinoa HOM05D000336 ORTHO05D000593 7.5e-06 54.3 61 44.3
Os02g0250300 Oryza sativa ssp. japonica HOM05D000336 ORTHO05D000593 7.5e-06 54.3 72 38.9
Atru.chr2.2246 Acer truncatum HOM05D000336 ORTHO05D000593 9.8e-06 53.9 87 36.8
CDE08G0518 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 9.8e-06 53.9 61 42.6
Ciclev10007829m.g Citrus clementina HOM05D000336 ORTHO05D000593 9.8e-06 53.9 61 44.3
Lalb_Chr05g0229061 Lupinus albus HOM05D000336 ORTHO05D002705 9.8e-06 53.9 66 34.8
Sc03g0010390 Simmondsia chinensis HOM05D000336 ORTHO05D000593 9.8e-06 53.9 61 42.6
HPP92_002843 Vanilla planifolia HOM05D000336 ORTHO05D000593 9.8e-06 53.9 72 38.9


User provided reference genes

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