Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 7.2e-223 776.9 395 100.0
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 8.2e-219 763.5 395 98.0
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 8.1e-174 614.0 395 78.5
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 4.9e-171 604.7 395 77.0
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 9.2e-170 600.5 395 77.0
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 3.5e-161 572.0 394 73.4
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 8.1e-158 560.8 372 76.6
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 7.1e-146 521.2 394 66.5
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 9.3e-146 520.8 395 65.6
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 4.6e-145 518.5 394 65.2
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 7.9e-145 517.7 394 64.5
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 8.4e-139 497.7 392 63.0
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 1.9e-138 496.5 394 63.7
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 1.2e-137 493.8 392 62.8
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 2.7e-137 492.7 389 63.8
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 7.9e-137 491.1 392 62.8
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 2.8e-134 482.6 394 59.9
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 1.1e-133 480.7 393 61.1
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 1.8e-133 479.9 389 61.4
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 6.9e-133 478.0 391 62.9
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 2.0e-132 476.5 393 60.6
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 4.5e-132 475.3 393 60.3
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 5.9e-132 474.9 403 60.0
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 7.6e-132 474.6 393 60.8
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 7.6e-132 474.6 391 62.4
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.0e-131 474.2 394 59.1
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.3e-131 473.8 386 64.5
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.3e-131 473.8 391 62.4
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 2.9e-131 472.6 392 58.9
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 6.5e-131 471.5 393 60.3
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 8.5e-131 471.1 393 60.3
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 8.5e-131 471.1 392 60.7
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 5.5e-130 468.4 392 62.0
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 7.2e-130 468.0 376 62.2
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 9.4e-130 467.6 389 60.7
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 1.6e-129 466.8 392 58.4
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 1.0e-128 464.2 389 61.2
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.3e-128 463.0 393 59.5
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 2.3e-128 463.0 394 60.9
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 3.3e-127 459.1 394 59.6
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 1.3e-126 457.2 393 59.5
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.7e-126 455.7 392 60.5
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 6.3e-126 454.9 392 59.4
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 2.4e-125 453.0 353 65.2
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 2.0e-124 449.9 393 55.7
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 3.4e-124 449.1 393 57.0
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 5.9e-124 448.4 393 55.5
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 1.7e-123 446.8 397 55.9
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 2.2e-123 446.4 394 56.3
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 3.2e-122 442.6 389 54.5
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 5.5e-122 441.8 392 57.7
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 9.4e-122 441.0 389 58.4
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 2.7e-121 439.5 393 56.5
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 7.9e-121 438.0 394 58.4
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 1.4e-120 437.2 394 56.3
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 5.1e-120 435.3 395 55.4
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 1.1e-119 434.1 388 58.5
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 1.5e-119 433.7 396 56.8
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 9.7e-119 431.0 394 53.6
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 1.3e-118 430.6 399 57.9
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 1.8e-117 426.8 394 53.0
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 1.8e-117 426.8 394 53.3
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 4.1e-117 425.6 395 54.2
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 4.1e-117 425.6 391 53.2
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 7.0e-117 424.9 393 54.5
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 1.2e-116 424.1 392 54.3
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 1.5e-116 423.7 391 55.8
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 1.7e-115 420.2 386 58.0
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 5.0e-115 418.7 391 52.7
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 5.0e-115 418.7 392 53.8
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 1.1e-114 417.5 395 55.2
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 1.9e-114 416.8 388 54.1
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 4.7e-113 412.1 389 52.4
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 1.0e-112 411.0 389 55.8
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 3.0e-112 409.5 393 53.9
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 5.2e-112 408.7 389 54.0
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 2.0e-111 406.8 397 53.7
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 3.3e-111 406.0 310 68.7
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 3.7e-110 402.5 392 51.8
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 1.4e-109 400.6 389 54.0
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 4.5e-108 395.6 396 52.8
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 4.5e-108 395.6 399 52.6
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 2.9e-107 392.9 395 52.9
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 6.5e-107 391.7 398 52.0
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 1.5e-106 390.6 389 52.2
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 3.2e-106 389.4 394 50.3
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 9.4e-106 387.9 416 49.8
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.7e-105 386.3 392 51.0
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 1.8e-104 383.6 389 49.4
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 4.0e-104 382.5 402 50.0
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 6.7e-104 381.7 389 48.6
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 2.6e-103 379.8 394 50.5
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 7.5e-103 378.3 417 48.4
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 2.2e-102 376.7 400 52.0
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 2.2e-102 376.7 402 49.3
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 2.8e-102 376.3 416 46.6
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 2.8e-102 376.3 416 46.6
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 6.3e-102 375.2 396 49.0
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 6.3e-102 375.2 393 50.6
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 1.1e-101 374.4 265 70.2
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 5.3e-101 372.1 397 49.1
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 7.0e-101 371.7 416 45.9
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 4.5e-100 369.0 315 62.2
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 5.0e-99 365.5 394 50.5
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 3.6e-97 359.4 391 47.8
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 2.3e-96 356.7 418 46.2
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 2.8e-94 349.7 391 47.6
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 7.0e-93 345.1 271 63.8
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 7.7e-92 341.7 387 45.5
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 8.6e-91 338.2 333 53.2
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.2e-79 301.2 311 49.2
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 2.6e-79 300.1 182 83.5
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 3.5e-68 263.1 422 40.5
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 2.4e-45 187.2 247 39.3
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 1.8e-40 171.0 311 39.2
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 3.8e-38 163.3 431 32.0
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 1.2e-36 158.3 226 35.0
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 1.6e-36 157.9 201 38.3
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 1.9e-34 151.0 343 30.6
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 6.4e-30 136.0 246 37.0
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 9.3e-29 132.1 180 48.3
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 4.6e-28 129.8 367 27.8
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 4.6e-28 129.8 367 27.8
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 4.3e-26 123.2 389 27.5
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 9.6e-26 122.1 400 24.8
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 1.3e-25 121.7 181 44.8
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 1.5e-23 114.8 287 28.6
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 1.3e-17 95.1 118 40.7
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 2.2e-17 94.4 374 24.9
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 3.9e-11 73.6 278 26.6
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 4.8e-09 66.6 47 76.6


User provided reference genes

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