Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049838 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D004962 5.3e-69 264.2 133 100.0
CSS0002438 Camellia sinensis var. sinensis HOM05D000222 ORTHO05D004962 5.7e-15 84.7 44 95.5
Dinv14377 Davidia involucrata HOM05D000222 ORTHO05D004962 5.9e-12 74.7 44 84.1
Lalb_Chr07g0187811 Lupinus albus HOM05D000222 ORTHO05D004962 5.9e-12 74.7 44 81.8
Cfa015061 Carpinus fangiana HOM05D000222 ORTHO05D004962 1.3e-11 73.6 44 81.8
arahy.Tifrunner.gnm1.ann1.EPT9JX Arachis hypogaea HOM05D000222 ORTHO05D004962 1.7e-11 73.2 45 80.0
arahy.Tifrunner.gnm1.ann1.J9EPM7 Arachis hypogaea HOM05D000222 ORTHO05D004962 1.7e-11 73.2 45 80.0
Peaxi162Scf00937g00112 Petunia axillaris HOM05D000222 ORTHO05D004962 2.3e-11 72.8 44 81.8
Atru.chr11.750 Acer truncatum HOM05D000222 ORTHO05D004962 2.9e-11 72.4 44 79.5
DCAR_023547 Daucus carota HOM05D000222 ORTHO05D004962 2.9e-11 72.4 44 77.3
Os03g0239200 Oryza sativa ssp. japonica HOM05D000222 ORTHO05D004962 2.9e-11 72.4 44 79.5
CANSAT78G2041 Cannabis sativa HOM05D000222 ORTHO05D004962 3.9e-11 72.0 44 79.5
Lalb_Chr13g0293651 Lupinus albus HOM05D000222 ORTHO05D004962 3.9e-11 72.0 44 77.3
Manes.15G137700 Manihot esculenta HOM05D000222 ORTHO05D004962 3.9e-11 72.0 44 79.5
Zm00001eb399110 Zea mays HOM05D000222 ORTHO05D004962 3.9e-11 72.0 44 77.3
CiPaw.06G056800 Carya illinoinensis HOM05D000222 ORTHO05D004962 6.6e-11 71.2 44 77.3
Zm00001eb010160 Zea mays HOM05D000222 ORTHO05D004962 6.6e-11 71.2 44 77.3
COL.COLO4_27597 Corchorus olitorius HOM05D000222 ORTHO05D004962 8.6e-11 70.9 44 77.3
Haze_10830 Corylus avellana HOM05D000222 ORTHO05D004962 8.6e-11 70.9 44 77.3
MBI19_g10908_MAGBIO Magnolia biondii HOM05D000222 ORTHO05D004962 8.6e-11 70.9 44 79.5
Manes.17G086800 Manihot esculenta HOM05D000222 ORTHO05D004962 8.6e-11 70.9 44 77.3
Thecc.02G305400 Theobroma cacao HOM05D000222 ORTHO05D004962 8.6e-11 70.9 44 79.5
Dinv05676 Davidia involucrata HOM05D000222 ORTHO05D004962 1.1e-10 70.5 42 85.7
Nn4g24491 Nelumbo nucifera HOM05D000222 ORTHO05D004962 1.1e-10 70.5 44 77.3
CiPaw.05G188400 Carya illinoinensis HOM05D000222 ORTHO05D004962 1.5e-10 70.1 44 77.3
Lj6A732T72 Lonicera japonica HOM05D000222 ORTHO05D004962 1.5e-10 70.1 43 81.4
PSO063G5028 Papaver somniferum HOM05D000222 ORTHO05D004962 1.5e-10 70.1 44 79.5
Cc11_g05940 Coffea canephora HOM05D000222 ORTHO05D004962 1.9e-10 69.7 44 77.3
HanXRQChr15g0471771 Helianthus annuus HOM05D000222 ORTHO05D004962 1.9e-10 69.7 44 77.3
PSO782G4980 Papaver somniferum HOM05D000222 ORTHO05D004962 1.9e-10 69.7 44 79.5
Actinidia20114 Actinidia chinensis HOM05D000222 ORTHO05D004962 2.5e-10 69.3 44 75.0
CSS0001128 Camellia sinensis var. sinensis HOM05D017771 ORTHO05D111383 2.5e-10 69.3 46 73.9
Rhsim09G0086600 Rhododendron simsii HOM05D000222 ORTHO05D004962 2.5e-10 69.3 42 83.3
Potri.010G102600 Populus trichocarpa HOM05D000222 ORTHO05D004962 3.3e-10 68.9 44 77.3
Solyc05g018500.3 Solanum lycopersicum HOM05D000222 ORTHO05D004962 3.3e-10 68.9 44 75.0
Sopen05g015580 Solanum pennellii HOM05D000222 ORTHO05D004962 3.3e-10 68.9 44 75.0
PGSC0003DMG400027429 Solanum tuberosum HOM05D000222 ORTHO05D004962 3.3e-10 68.9 44 75.0
Phvul.002G182200 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 4.3e-10 68.6 44 75.0
VMungo0251G0007 Vigna mungo HOM05D000222 ORTHO05D004962 4.3e-10 68.6 44 75.0
Actinidia12434 Actinidia chinensis HOM05D000222 ORTHO05D004962 5.6e-10 68.2 44 75.0
Duzib251G0369 Durio zibethinus HOM05D000222 ORTHO05D004962 5.6e-10 68.2 44 75.0
SGA_v2.0_scaffold65G22111 Striga asiatica HOM05D000222 ORTHO05D004962 5.6e-10 68.2 42 81.0
Aqoxy3G04105 Aquilegia oxysepala HOM05D000222 ORTHO05D004962 7.3e-10 67.8 42 83.3
DCAR_030303 Daucus carota HOM05D000222 ORTHO05D004962 7.3e-10 67.8 43 74.4
Duzib248G1586 Durio zibethinus HOM05D000222 ORTHO05D004962 7.3e-10 67.8 44 75.0
Glyma.05G138900 Glycine max HOM05D000222 ORTHO05D004962 7.3e-10 67.8 44 75.0
Glyma.08G094100 Glycine max HOM05D000222 ORTHO05D004962 7.3e-10 67.8 44 75.0
Lj3A861T64 Lonicera japonica HOM05D000222 ORTHO05D004962 9.5e-10 67.4 44 77.3
QL03p038766 Quercus lobata HOM05D000222 ORTHO05D004962 9.5e-10 67.4 43 76.7
Actinidia34054 Actinidia chinensis HOM05D000222 ORTHO05D004962 1.2e-09 67.0 44 75.0
Gohir.A13G029500 Gossypium hirsutum HOM05D000222 ORTHO05D004962 1.2e-09 67.0 44 75.0
Gohir.D13G027800 Gossypium hirsutum HOM05D000222 ORTHO05D004962 1.2e-09 67.0 44 75.0
Gorai.013G031700 Gossypium raimondii HOM05D000222 ORTHO05D004962 1.2e-09 67.0 44 75.0
Hma1.2p1_0037F.1_g023820 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 1.2e-09 67.0 40 85.0
MD16G1014700 Malus domestica HOM05D000222 ORTHO05D004962 1.2e-09 67.0 42 83.3
MSTRG.13646 Avicennia marina HOM05D000222 ORTHO05D004962 1.6e-09 66.6 42 78.6
Potri.008G138100 Populus trichocarpa HOM05D000222 ORTHO05D004962 1.6e-09 66.6 44 72.7
Migut.E00527 Erythranthe guttata HOM05D000222 ORTHO05D004962 2.1e-09 66.2 42 78.6
Nitab4.5_0003878g0010 Nicotiana tabacum HOM05D000222 ORTHO05D004962 2.1e-09 66.2 41 82.9
CAN.G647.5 Capsicum annuum HOM05D000222 ORTHO05D004962 2.8e-09 65.9 44 72.7
AUR62024691 Chenopodium quinoa HOM05D000222 ORTHO05D004962 2.8e-09 65.9 44 70.5
Eucgr.B02662 Eucalyptus grandis HOM05D000222 ORTHO05D004962 2.8e-09 65.9 42 81.0
MD13G1016800 Malus domestica HOM05D000222 ORTHO05D004962 2.8e-09 65.9 42 81.0
Prupe.1G336600 Prunus persica HOM05D000222 ORTHO05D004962 2.8e-09 65.9 42 81.0
Hund22722 Selenicereus undatus HOM05D000222 ORTHO05D004962 2.8e-09 65.9 42 73.8
Ah.08g214190 Amaranthus hybridus HOM05D000222 ORTHO05D004962 3.6e-09 65.5 44 70.5
ATR0598G253 Amborella trichopoda HOM05D000222 ORTHO05D004962 3.6e-09 65.5 44 70.5
EL10Ac6g14203 Beta vulgaris HOM05D000222 ORTHO05D004962 3.6e-09 65.5 44 70.5
Ciclev10014296m.g Citrus clementina HOM05D000222 ORTHO05D004962 3.6e-09 65.5 44 79.5
Psat7g083280 Pisum sativum HOM05D000222 ORTHO05D004962 3.6e-09 65.5 44 68.2
Lj4g0012229 Lotus japonicus HOM05D000222 ORTHO05D004962 4.7e-09 65.1 44 72.7
Nitab4.5_0013820g0010 Nicotiana tabacum HOM05D000222 ORTHO05D004962 4.7e-09 65.1 41 80.5
HPP92_004208 Vanilla planifolia HOM05D000222 ORTHO05D004962 6.1e-09 64.7 44 75.0
AUR62011848 Chenopodium quinoa HOM05D000222 ORTHO05D004962 8.0e-09 64.3 44 68.2
Ca_11582_v3 Cicer arietinum L. HOM05D000222 ORTHO05D004962 8.0e-09 64.3 44 68.2
Ca_18180_v3 Cicer arietinum L. HOM05D000222 ORTHO05D004962 8.0e-09 64.3 44 68.2
Sabra08G0105200 Salix brachista HOM05D000222 ORTHO05D004962 8.0e-09 64.3 42 76.2
Phvul.003G014700 Phaseolus vulgaris HOM05D000222 ORTHO05D004962 1.0e-08 63.9 44 68.2
VMungo1215G2627 Vigna mungo HOM05D000222 ORTHO05D004962 1.0e-08 63.9 44 68.2
ECA234G2546 Erigeron canadensis HOM05D000222 ORTHO05D004962 1.4e-08 63.5 44 65.9
THA.LOC104805095 Tarenaya hassleriana HOM05D000222 ORTHO05D004962 2.3e-08 62.8 44 68.2
CDE05G0510 Ceratophyllum demersum HOM05D000222 ORTHO05D004962 3.1e-08 62.4 44 68.2
CDE11G1150 Ceratophyllum demersum HOM05D000222 ORTHO05D004962 3.1e-08 62.4 44 68.2
FvH4_4g33110 Fragaria vesca HOM05D000222 ORTHO05D004962 4.0e-08 62.0 42 76.2
FAN07G1810 Fragaria x ananassa HOM05D000222 ORTHO05D004962 4.0e-08 62.0 42 76.2
FAN12G2155 Fragaria x ananassa HOM05D000222 ORTHO05D004962 4.0e-08 62.0 42 76.2
FAN17G0744 Fragaria x ananassa HOM05D000222 ORTHO05D004962 4.0e-08 62.0 42 76.2
TWI74G1486 Tripterygium wilfordii HOM05D000222 ORTHO05D004962 4.0e-08 62.0 42 73.8
RcHm_v2.0_Chr4g0442161 Rosa chinensis HOM05D000222 ORTHO05D004962 5.2e-08 61.6 42 76.2
Cpa.g.sc2.140 Carica papaya HOM05D000222 ORTHO05D004962 6.8e-08 61.2 42 76.2
ClCG01G006740 Citrullus lanatus HOM05D000222 ORTHO05D004962 8.9e-08 60.8 42 73.8
CsaV3_5G027810 Cucumis sativus L. HOM05D000222 ORTHO05D004962 8.9e-08 60.8 42 73.8
Oeu044992.1 Olea europaea HOM05D000222 ORTHO05D004962 8.9e-08 60.8 42 69.0
AUR62024692 Chenopodium quinoa HOM05D000222 ORTHO05D004962 1.2e-07 60.5 44 65.9
FAN22G0304 Fragaria x ananassa HOM05D000222 ORTHO05D004962 1.2e-07 60.5 42 73.8
Sed0022559 Sechium edule HOM05D000222 ORTHO05D004962 1.2e-07 60.5 42 76.2
TPR.G5124 Trifolium pratense HOM05D000222 ORTHO05D004962 1.2e-07 60.5 44 63.6
Lj2g0002621 Lotus japonicus HOM05D000222 ORTHO05D004962 1.5e-07 60.1 40 75.0
ECA246G4790 Erigeron canadensis HOM05D000222 ORTHO05D004962 2.6e-07 59.3 33 81.8
Aa31LG1G350 Aethionema arabicum HOM05D000222 ORTHO05D004962 3.4e-07 58.9 44 68.2
Hma1.2p1_1450F.1_g284240 Hydrangea macrophylla HOM05D000222 ORTHO05D004962 3.4e-07 58.9 42 71.4
Sc14g0006790 Simmondsia chinensis HOM05D000222 ORTHO05D004962 3.4e-07 58.9 35 74.3
unitig_52.g17291 Utricularia gibba HOM05D000222 ORTHO05D004962 3.4e-07 58.9 40 70.0
CARHR015270 Cardamine hirsuta HOM05D000222 ORTHO05D004962 4.4e-07 58.5 42 71.4
MSTRG.2110 Avicennia marina HOM05D000222 ORTHO05D004962 5.8e-07 58.2 42 66.7
BcaC07g38759 Brassica carinata HOM05D000222 ORTHO05D004962 5.8e-07 58.2 42 69.0
C08p16900 Brassica napus HOM05D000222 ORTHO05D004962 5.8e-07 58.2 42 69.0
BolC8t49317H Brassica oleracea HOM05D000222 ORTHO05D004962 5.8e-07 58.2 42 69.0
Sed0000815 Sechium edule HOM05D000222 ORTHO05D004962 5.8e-07 58.2 42 69.0
BcaB02g06545 Brassica carinata HOM05D000222 ORTHO05D004962 7.5e-07 57.8 42 69.0
A06p10790 Brassica napus HOM05D000222 ORTHO05D004962 7.5e-07 57.8 42 69.0
BraA06t24257Z Brassica rapa HOM05D000222 ORTHO05D004962 7.5e-07 57.8 42 69.0
Sp1g13180 Schrenkiella parvula HOM05D000222 ORTHO05D004962 7.5e-07 57.8 42 69.0
AL1G26750 Arabidopsis lyrata HOM05D000222 ORTHO05D004962 9.8e-07 57.4 42 69.0
AT1G14740 Arabidopsis thaliana HOM05D000222 ORTHO05D004962 9.8e-07 57.4 42 69.0
Thhalv10006891m.g Eutrema salsugineum HOM05D000222 ORTHO05D004962 9.8e-07 57.4 42 69.0
BcaB03g13083 Brassica carinata HOM05D000222 ORTHO05D004962 1.3e-06 57.0 42 69.0
Carub.0001s1452 Capsella rubella HOM05D000222 ORTHO05D004962 1.3e-06 57.0 42 69.0
BcaC05g25393 Brassica carinata HOM05D000222 ORTHO05D004962 2.2e-06 56.2 41 68.3
C05p12690 Brassica napus HOM05D000222 ORTHO05D004962 2.2e-06 56.2 41 68.3
BolC5t30012H Brassica oleracea HOM05D000222 ORTHO05D004962 2.2e-06 56.2 41 68.3
PGSC0003DMG400022774 Solanum tuberosum HOM05D000222 ORTHO05D004962 3.7e-06 55.5 41 65.9
CAN.G282.109 Capsicum annuum HOM05D000222 ORTHO05D004962 6.4e-06 54.7 41 68.3
Glyma.07G174100 Glycine max HOM05D000222 ORTHO05D004962 6.4e-06 54.7 41 63.4
Glyma.20G012600 Glycine max HOM05D000222 ORTHO05D004962 8.3e-06 54.3 42 61.9
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 8.3e-06 54.3 41 63.4


User provided reference genes

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