Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.0e-99 366.7 177 100.0
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 3.7e-54 215.3 187 65.2
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.1e-53 211.8 181 63.5
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.3e-51 206.8 181 61.3
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.3e-51 206.8 188 61.2
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 2.3e-51 206.1 194 60.8
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 8.6e-51 204.1 184 62.5
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 8.6e-51 204.1 194 61.9
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 4.3e-50 201.8 182 61.5
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 7.3e-50 201.1 190 60.0
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.1e-48 197.2 188 60.1
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.1e-48 197.2 188 60.6
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 4.0e-48 195.3 196 58.2
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 5.2e-48 194.9 189 59.8
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 7.6e-47 191.0 186 59.1
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 9.9e-47 190.7 185 60.5
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.3e-46 190.3 166 64.5
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 8.4e-46 187.6 181 59.1
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.1e-45 187.2 200 54.0
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.1e-45 187.2 184 60.3
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 2.4e-45 186.0 197 55.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 2.4e-45 186.0 189 57.1
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 3.2e-45 185.7 191 58.6
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 3.2e-45 185.7 195 58.5
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 5.4e-45 184.9 194 57.7
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 7.1e-45 184.5 187 57.8
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 7.1e-45 184.5 188 58.0
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 7.1e-45 184.5 188 58.0
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 7.1e-45 184.5 185 57.3
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 9.3e-45 184.1 195 57.4
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 1.2e-44 183.7 197 57.4
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.2e-44 183.7 190 58.4
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 2.7e-44 182.6 189 57.7
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.7e-44 182.6 192 55.7
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 6.0e-44 181.4 198 56.6
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 7.8e-44 181.0 198 55.6
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 7.8e-44 181.0 199 56.3
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.0e-43 180.6 185 59.5
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 3.0e-43 179.1 194 54.1
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.0e-43 179.1 190 55.8
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 1.5e-42 176.8 187 55.1
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 7.3e-42 174.5 188 55.3
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 9.6e-42 174.1 185 57.8
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.6e-41 173.3 190 53.7
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 2.1e-41 172.9 186 56.5
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.1e-41 172.9 192 53.6
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 4.8e-41 171.8 189 53.4
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.8e-41 171.8 192 53.6
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 4.8e-41 171.8 187 56.1
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 6.2e-41 171.4 185 54.6
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 8.1e-41 171.0 181 56.9
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.4e-40 169.5 192 54.7
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.4e-40 169.5 192 54.7
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.4e-40 169.5 192 54.7
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 2.4e-40 169.5 185 55.7
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 3.1e-40 169.1 188 53.2
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 3.1e-40 169.1 186 53.8
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 9.0e-40 167.5 183 53.6
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 9.0e-40 167.5 187 52.9
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.5e-39 166.8 187 53.5
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 1.5e-39 166.8 180 55.6
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 2.6e-39 166.0 187 54.5
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 2.6e-39 166.0 189 55.0
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 9.9e-39 164.1 191 51.3
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.3e-38 163.7 190 54.7
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 2.9e-38 162.5 192 52.6
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.9e-38 162.5 191 50.3
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.8e-38 162.2 188 53.2
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 4.9e-38 161.8 190 53.2
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 4.9e-38 161.8 193 54.4
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 4.9e-38 161.8 192 53.1
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 8.4e-38 161.0 183 54.6
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 8.4e-38 161.0 189 52.9
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.1e-37 157.9 181 54.7
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.1e-37 157.9 181 54.7
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 7.1e-37 157.9 181 54.7
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 2.1e-36 156.4 190 48.4
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 7.9e-36 154.5 188 50.0
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 7.9e-36 154.5 187 51.3
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.0e-35 154.1 214 46.7
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.3e-35 153.7 186 52.2
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 2.3e-35 152.9 174 50.6
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 3.0e-35 152.5 192 52.1
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 3.0e-35 152.5 192 52.1
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 3.0e-35 152.5 192 52.1
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 3.0e-35 152.5 192 52.1
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.1e-35 151.8 188 51.6
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 6.6e-35 151.4 186 53.8
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 8.7e-35 151.0 194 49.5
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.1e-34 150.6 196 50.0
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 2.5e-34 149.4 193 50.3
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.1e-33 146.4 210 48.1
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 4.8e-33 145.2 202 48.0
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.4e-32 143.7 211 51.2
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 1.4e-32 143.7 199 49.7
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 6.9e-32 141.4 177 50.3
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 9.0e-32 141.0 184 46.7
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 9.0e-32 141.0 191 51.3
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 5.8e-31 138.3 178 46.1
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.3e-30 137.1 195 51.8
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 2.2e-30 136.3 197 44.7
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.9e-30 135.2 183 48.1
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 4.9e-30 135.2 203 45.8
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 8.4e-30 134.4 209 49.3
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 8.4e-30 134.4 197 48.2
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.4e-29 132.9 183 47.5
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 3.2e-29 132.5 205 44.4
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 4.2e-29 132.1 194 49.0
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 5.4e-29 131.7 194 50.0
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 7.1e-29 131.3 194 50.0
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 7.1e-29 131.3 194 50.0
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 7.1e-29 131.3 194 50.0
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 1.6e-28 130.2 201 48.8
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 2.1e-28 129.8 194 49.5
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 4.6e-28 128.6 196 42.9
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 3.0e-27 125.9 194 46.9
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 6.7e-27 124.8 182 46.2
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.1e-26 124.0 195 47.2
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 5.6e-26 121.7 225 44.9
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 5.6e-26 121.7 213 46.0
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 9.6e-26 120.9 220 45.0
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 9.6e-26 120.9 220 45.0
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 9.6e-26 120.9 191 41.4
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 1.4e-24 117.1 182 45.1
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 1.8e-24 116.7 224 43.3
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 5.3e-24 115.2 209 44.5
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.0e-22 110.9 124 53.2
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.7e-22 110.2 209 45.9
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 8.4e-22 107.8 204 43.1
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 5.5e-21 105.1 209 42.1
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.2e-20 104.0 183 41.5
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.0e-19 99.4 183 42.1
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 3.3e-18 95.9 97 56.7
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 9.6e-18 94.4 75 70.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 2.8e-17 92.8 199 36.7
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 4.8e-17 92.0 187 38.0
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.1e-16 90.9 126 48.4
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 2.4e-16 89.7 182 37.4
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.6e-15 86.3 87 57.5
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 5.8e-15 85.1 171 40.4
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.9e-14 82.8 164 38.4
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 1.4e-13 80.5 90 52.2
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 3.2e-13 79.3 160 37.5
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 5.5e-13 78.6 142 43.0
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 7.9e-12 74.7 147 39.5
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.0e-11 74.3 178 36.5
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 1.8e-11 73.6 176 35.8
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.3e-11 73.2 180 33.3
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 6.7e-11 71.6 45 73.3
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 3.3e-10 69.3 181 34.3
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 5.7e-10 68.6 182 32.4
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 7.4e-10 68.2 166 32.5
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 1.6e-09 67.0 173 31.2
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 1.6e-09 67.0 178 29.8
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 2.2e-09 66.6 175 32.6
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 3.7e-09 65.9 186 31.7
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.8e-09 65.5 178 32.0
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 6.3e-09 65.1 165 30.3
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 3.1e-08 62.8 177 32.2
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 3.1e-08 62.8 176 31.8
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 4.1e-08 62.4 167 31.1
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 5.3e-08 62.0 177 29.9
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 6.9e-08 61.6 179 34.1
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 6.9e-08 61.6 179 30.7
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.2e-07 60.8 161 31.7
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 1.5e-07 60.5 177 28.8
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.5e-07 60.5 180 30.0
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 1.5e-07 60.5 176 28.4
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 2.6e-07 59.7 174 28.2
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 3.4e-07 59.3 190 30.0
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 3.4e-07 59.3 176 32.4
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 3.4e-07 59.3 176 32.4
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 4.5e-07 58.9 165 30.3
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 5.9e-07 58.5 166 30.7
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 5.9e-07 58.5 177 27.7
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 5.9e-07 58.5 158 30.4
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 5.9e-07 58.5 156 32.1
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 5.9e-07 58.5 178 30.9
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.0e-06 57.8 178 30.9
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 1.0e-06 57.8 178 30.9
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 1.7e-06 57.0 160 32.5
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 1.7e-06 57.0 180 30.6
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 2.2e-06 56.6 163 33.7
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 2.9e-06 56.2 174 30.5
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 6.5e-06 55.1 180 30.6
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 8.5e-06 54.7 174 29.3


User provided reference genes

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