Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049829 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.8e-57 224.6 109 100.0
CSS0006246 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.1e-35 151.4 127 64.6
CSS0015804 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 5.5e-32 141.0 124 62.1
CSS0034568 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.3e-28 129.8 125 59.2
CSS0019428 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.4e-27 126.3 118 62.7
CSS0044825 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.5e-24 116.3 103 61.2
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 8.9e-22 107.1 120 51.7
CSS0036393 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 2.6e-21 105.5 70 81.4
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 5.7e-21 104.4 106 55.7
Actinidia37813 Actinidia chinensis HOM05D002156 ORTHO05D002328 2.2e-20 102.4 102 55.9
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 6.3e-20 100.9 100 56.0
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 1.2e-18 96.7 119 49.6
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 2.7e-18 95.5 103 52.4
Oeu056497.3 Olea europaea HOM05D002156 ORTHO05D002328 2.3e-17 92.4 105 49.5
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 1.2e-15 86.7 103 53.4
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 1.6e-15 86.3 88 52.3
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 1.6e-15 86.3 118 45.8
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 2.8e-15 85.5 96 50.0
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 4.7e-15 84.7 83 54.2
CSS0046945 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 6.1e-15 84.3 112 49.1
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 8.0e-15 84.0 86 53.5
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 1.0e-14 83.6 85 52.9
Sabra13G0056700 Salix brachista HOM05D002156 ORTHO05D002328 1.4e-14 83.2 124 42.7
CSS0040964 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 5.2e-14 81.3 96 54.2
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 5.2e-14 81.3 85 52.9
PGSC0003DMG400008732 Solanum tuberosum HOM05D002156 ORTHO05D002328 8.9e-14 80.5 85 51.8
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 1.2e-13 80.1 99 48.5
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 1.2e-13 80.1 103 45.6
MBI11_g23644_MAGBIO Magnolia biondii HOM05D002156 ORTHO05D002328 1.2e-13 80.1 107 43.9
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.5e-13 79.7 101 46.5
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 2.0e-13 79.3 99 47.5
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 2.0e-13 79.3 85 49.4
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 2.6e-13 79.0 118 42.4
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 2.6e-13 79.0 119 42.0
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 3.4e-13 78.6 125 40.0
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 3.4e-13 78.6 86 51.2
Potri.013G064800 Populus trichocarpa HOM05D002156 ORTHO05D002328 4.4e-13 78.2 119 40.3
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 5.8e-13 77.8 118 39.8
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 7.5e-13 77.4 84 52.4
Manes.08G153900 Manihot esculenta HOM05D002156 ORTHO05D002328 7.5e-13 77.4 111 44.1
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 7.5e-13 77.4 85 50.6
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 7.5e-13 77.4 85 50.6
Cpa.g.sc161.28 Carica papaya HOM05D002156 ORTHO05D002328 9.8e-13 77.0 126 38.1
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 9.8e-13 77.0 125 39.2
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 9.8e-13 77.0 84 51.2
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 9.8e-13 77.0 71 57.7
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 1.3e-12 76.6 80 51.2
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.3e-12 76.6 86 50.0
Migut.K00223 Erythranthe guttata HOM05D002156 ORTHO05D002328 1.7e-12 76.3 103 44.7
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 2.2e-12 75.9 86 46.5
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 2.9e-12 75.5 101 44.6
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 2.9e-12 75.5 86 50.0
TAR369G0087 Trochodendron aralioides HOM05D002156 ORTHO05D002328 4.9e-12 74.7 60 61.7
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 6.4e-12 74.3 100 43.0
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 6.4e-12 74.3 99 47.5
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 1.1e-11 73.6 122 42.6
ECA248G3031 Erigeron canadensis HOM05D002156 ORTHO05D002328 1.4e-11 73.2 106 43.4
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 2.4e-11 72.4 85 48.2
Lsat_1_v5_gn_2_103620 Lactuca sativa HOM05D002156 ORTHO05D002328 2.4e-11 72.4 102 47.1
COL.COLO4_28629 Corchorus olitorius HOM05D002156 ORTHO05D002328 3.2e-11 72.0 101 39.6
TWI32G0999 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 3.2e-11 72.0 112 42.9
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 5.4e-11 71.2 108 40.7
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 7.0e-11 70.9 118 37.3
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 7.0e-11 70.9 113 43.4
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 1.2e-10 70.1 88 46.6
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.6e-10 69.7 98 46.9
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 1.6e-10 69.7 84 50.0
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.6e-10 69.7 84 50.0
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 1.6e-10 69.7 84 47.6
ATR0618G027 Amborella trichopoda HOM05D002156 ORTHO05D002328 2.7e-10 68.9 100 44.0
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 2.7e-10 68.9 77 49.4
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.5e-10 68.6 117 35.0
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 4.6e-10 68.2 113 41.6
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 4.6e-10 68.2 113 40.7
Sed0005796 Sechium edule HOM05D002156 ORTHO05D002328 4.6e-10 68.2 91 46.2
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 6.0e-10 67.8 119 35.3
TWI34G0345 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 6.0e-10 67.8 100 42.0
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 7.8e-10 67.4 107 42.1
CSS0040407 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.3e-09 66.6 79 55.7
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.7e-09 66.2 119 34.5
Nitab4.5_0000098g0160 Nicotiana tabacum HOM05D002156 ORTHO05D002328 1.7e-09 66.2 50 66.0
Haze_20432 Corylus avellana HOM05D002156 ORTHO05D002328 2.3e-09 65.9 86 45.3
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 2.3e-09 65.9 94 43.6
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 3.0e-09 65.5 77 48.1
ECA238G1359 Erigeron canadensis HOM05D002156 ORTHO05D002328 3.0e-09 65.5 88 48.9
PGR042G0405 Punica granatum HOM05D002156 ORTHO05D002328 3.0e-09 65.5 100 39.0
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 3.9e-09 65.1 105 36.2
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 3.9e-09 65.1 101 41.6
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 5.0e-09 64.7 107 41.1
AL1G42570 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 6.6e-09 64.3 80 48.8
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 8.6e-09 63.9 121 39.7
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 1.1e-08 63.5 85 43.5
HPP92_012146 Vanilla planifolia HOM05D002156 ORTHO05D002328 1.5e-08 63.2 93 43.0
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.9e-08 62.8 90 43.3
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.9e-08 62.8 121 39.7
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 1.9e-08 62.8 122 36.9
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 2.5e-08 62.4 107 40.2
Carub.0001s2716 Capsella rubella HOM05D002156 ORTHO05D002328 3.3e-08 62.0 115 39.1
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 3.3e-08 62.0 112 38.4
HanXRQChr07g0197191 Helianthus annuus HOM05D002156 ORTHO05D002328 3.3e-08 62.0 75 46.7
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 4.3e-08 61.6 109 36.7
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 5.6e-08 61.2 80 45.0
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 7.3e-08 60.8 89 44.9
AT1G28760 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 9.5e-08 60.5 90 43.3
CARHR028160 Cardamine hirsuta HOM05D002156 ORTHO05D002328 9.5e-08 60.5 80 43.8
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 1.2e-07 60.1 80 43.8
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 2.1e-07 59.3 80 43.8
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 2.1e-07 59.3 80 43.8
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 2.8e-07 58.9 80 43.8
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 2.8e-07 58.9 80 43.8
Nn5g30618 Nelumbo nucifera HOM05D002156 ORTHO05D002328 2.8e-07 58.9 78 41.0
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 2.8e-07 58.9 60 53.3
Gorai.004G099300 Gossypium raimondii HOM05D002156 ORTHO05D002328 6.2e-07 57.8 121 38.0
COL.COLO4_11588 Corchorus olitorius HOM05D002156 ORTHO05D002328 1.1e-06 57.0 79 40.5
Dinv04039 Davidia involucrata HOM05D002156 ORTHO05D002328 1.4e-06 56.6 60 46.7
Rhsim10G0099000 Rhododendron simsii HOM05D002156 ORTHO05D002328 1.4e-06 56.6 71 45.1
Sabra07G0004000 Salix brachista HOM05D002156 ORTHO05D002328 1.8e-06 56.2 75 44.0
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 2.3e-06 55.8 75 44.0
TAR381G0066 Trochodendron aralioides HOM05D002156 ORTHO05D002328 3.1e-06 55.5 41 61.0
BraA02t06666Z Brassica rapa HOM05D000385 ORTHO05D000269 5.2e-06 54.7 39 64.1
Gohir.D08G093700 Gossypium hirsutum HOM05D002156 ORTHO05D002328 5.2e-06 54.7 121 36.4
SEGI_16432 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 5.2e-06 54.7 65 47.7
Thecc.01G073700 Theobroma cacao HOM05D002156 ORTHO05D002328 5.2e-06 54.7 61 45.9
Migut.H00340 Erythranthe guttata HOM05D002156 ORTHO05D002328 6.8e-06 54.3 66 43.9
Gohir.D06G126975 Gossypium hirsutum HOM05D002156 ORTHO05D002328 6.8e-06 54.3 121 36.4
Actinidia34534 Actinidia chinensis HOM05D002156 ORTHO05D002328 8.9e-06 53.9 66 39.4
Cc07_g07180 Coffea canephora HOM05D002156 ORTHO05D002328 8.9e-06 53.9 59 45.8
Peaxi162Scf00449g00322 Petunia axillaris HOM05D002156 ORTHO05D002328 8.9e-06 53.9 39 59.0


User provided reference genes

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