Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-88 329.7 183 100.0
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-87 325.1 183 98.9
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-86 322.0 183 97.8
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.8e-86 321.6 183 97.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-85 320.1 183 97.3
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.9e-85 319.3 181 97.8
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-76 290.0 183 91.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-74 282.0 197 84.8
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-74 282.0 197 84.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.4e-74 281.6 201 83.1
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.5e-71 271.9 201 80.6
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.9e-43 177.9 194 59.3
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 6.9e-43 177.9 207 59.9
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-42 177.2 194 60.3
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.9e-37 159.8 202 55.0
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 5.6e-37 158.3 202 53.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.1e-35 152.5 205 52.7
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 7.6e-34 147.9 212 49.5
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 7.6e-34 147.9 212 49.5
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.8e-33 145.6 205 51.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.2e-32 142.5 198 49.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.0e-30 137.5 198 53.5
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.5e-29 132.9 201 48.3
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 3.1e-27 125.9 202 47.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.2e-26 124.0 202 46.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.6e-26 122.9 202 46.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.6e-26 122.9 202 46.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 5.8e-26 121.7 208 47.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 7.6e-26 121.3 205 45.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.2e-25 119.8 205 44.4
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 3.8e-25 119.0 198 46.0
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.4e-24 116.3 208 42.3
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.1e-23 113.2 204 42.2
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 4.6e-23 112.1 204 42.6
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 7.9e-23 111.3 202 43.1
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.3e-22 110.5 204 41.2
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.3e-22 110.5 191 45.5
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.8e-22 110.2 203 42.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 3.9e-22 109.0 209 41.6
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 8.7e-22 107.8 195 44.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.9e-21 106.7 198 42.4
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.3e-21 105.5 198 41.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 5.6e-21 105.1 199 42.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 9.6e-21 104.4 210 44.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.1e-20 103.2 198 41.9
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 6.2e-20 101.7 208 41.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.2e-20 101.7 196 41.8
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 8.2e-20 101.3 208 41.8
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.1e-19 100.9 199 40.2
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.4e-19 99.8 199 42.2
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 3.1e-19 99.4 197 42.1
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.0e-19 99.0 197 40.1
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 6.9e-19 98.2 195 42.6
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 9.0e-19 97.8 210 40.0
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 9.0e-19 97.8 205 41.0
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 5.8e-18 95.1 194 39.7
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.7e-17 93.6 188 39.9
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.9e-17 92.8 196 40.8
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 4.9e-17 92.0 196 40.8
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 4.9e-17 92.0 208 43.3
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 4.9e-17 92.0 210 41.9
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 6.5e-17 91.7 197 42.1
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 8.4e-17 91.3 201 39.3
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.1e-16 90.9 211 40.3
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 2.5e-16 89.7 204 39.7
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 2.5e-16 89.7 203 40.9
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 5.5e-16 88.6 200 38.5
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 5.5e-16 88.6 212 37.7
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 9.3e-16 87.8 199 37.7
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 9.3e-16 87.8 199 37.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.2e-15 87.4 196 40.3
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.6e-15 87.0 196 37.8
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 4.6e-15 85.5 193 39.4
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 4.6e-15 85.5 204 36.8
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 7.9e-15 84.7 209 39.7
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 7.9e-15 84.7 178 38.2
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.0e-14 84.3 195 39.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.0e-14 84.3 198 36.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.0e-14 84.3 182 37.4
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.8e-14 83.6 181 37.0
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 2.3e-14 83.2 194 39.2
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 3.0e-14 82.8 166 39.8
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.9e-14 82.4 209 37.8
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 5.1e-14 82.0 196 36.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.7e-14 81.6 202 37.1
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 8.7e-14 81.3 202 37.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.1e-13 80.9 213 39.0
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.5e-13 79.7 196 37.8
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.5e-13 79.7 136 44.9
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 3.3e-13 79.3 150 38.7
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 3.3e-13 79.3 200 39.0
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.4e-13 78.2 206 35.9
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 9.7e-13 77.8 202 35.1
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.2e-12 76.6 132 43.9
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.8e-12 76.3 154 39.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 4.8e-12 75.5 198 35.4
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 6.3e-12 75.1 217 34.6
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 8.2e-12 74.7 192 38.0
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.4e-11 73.9 199 35.2
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.4e-11 73.9 194 34.5
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 5.3e-11 72.0 204 35.3
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.2e-10 70.9 202 36.1
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.5e-10 70.5 201 35.8
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 4.5e-10 68.9 155 36.8
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.0e-09 67.8 200 36.5
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.3e-09 67.4 140 38.6
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.9e-09 66.2 192 35.9
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.9e-09 66.2 192 35.9
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 3.8e-09 65.9 197 34.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 3.8e-09 65.9 203 36.5
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 5.0e-09 65.5 192 35.4
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 5.0e-09 65.5 194 38.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 6.5e-09 65.1 198 38.9
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 6.5e-09 65.1 118 42.4
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 8.5e-09 64.7 196 37.2
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 8.5e-09 64.7 196 37.2
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 8.5e-09 64.7 196 36.7
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.4e-08 63.9 199 34.7
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.4e-08 63.9 133 39.1
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.4e-08 63.9 213 34.3
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.9e-08 63.5 206 32.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.5e-08 63.2 196 38.3
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.5e-08 63.2 203 34.0
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 4.2e-08 62.4 115 40.0
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 7.2e-08 61.6 197 34.0
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 9.4e-08 61.2 197 34.0
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.2e-07 60.8 197 38.1
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 1.2e-07 60.8 203 37.4
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.1e-07 60.1 199 37.2
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.0e-06 57.8 200 34.5
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-06 57.4 197 30.5
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 2.3e-06 56.6 135 34.8
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 6.7e-06 55.1 63 46.0


User provided reference genes

Program Settings