Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.7e-80 302.0 156 100.0
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.3e-39 166.0 162 62.3
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 3.4e-35 152.1 157 58.0
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.2e-33 145.6 172 57.6
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 2.7e-32 142.5 194 51.5
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 3.6e-32 142.1 178 53.9
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 3.6e-32 142.1 191 50.3
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.0e-31 139.0 161 54.7
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 2.5e-30 136.0 168 51.2
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 7.4e-30 134.4 183 50.3
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 9.7e-30 134.0 183 50.3
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 9.7e-30 134.0 179 49.2
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 6.3e-29 131.3 180 47.2
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 8.2e-29 131.0 181 50.8
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 8.2e-29 131.0 183 50.3
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.1e-28 130.6 194 47.4
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.3e-28 128.3 180 46.7
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.5e-27 126.7 168 51.8
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.5e-27 126.7 186 48.9
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.6e-27 125.9 170 50.6
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.2e-26 122.9 191 47.6
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.2e-26 122.9 191 47.6
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.0e-26 121.7 173 46.2
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 5.0e-26 121.7 180 48.9
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 8.5e-26 120.9 192 46.4
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.4e-25 120.2 185 48.6
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.2e-25 119.0 168 46.4
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 4.2e-25 118.6 188 45.7
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.1e-24 114.8 172 44.2
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.8e-23 113.2 190 45.3
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.3e-23 112.8 159 49.1
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.1e-23 111.7 174 42.5
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 5.7e-22 108.2 192 42.7
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 2.8e-21 105.9 109 55.0
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 3.7e-21 105.5 173 45.1
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 6.3e-21 104.8 150 45.3
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.1e-20 104.0 176 44.3
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.1e-20 104.0 158 46.2
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.8e-20 103.2 179 47.5
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.8e-20 103.2 163 46.6
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.8e-20 103.2 171 45.0
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 3.1e-20 102.4 198 39.9
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 3.1e-20 102.4 191 43.5
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.1e-20 102.4 169 43.8
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 5.3e-20 101.7 182 40.1
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 5.3e-20 101.7 169 43.8
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.5e-19 100.1 143 49.7
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 2.0e-19 99.8 176 42.6
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 3.5e-19 99.0 175 42.3
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 3.5e-19 99.0 170 40.6
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.5e-19 98.6 169 45.6
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 7.7e-19 97.8 186 42.5
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 7.7e-19 97.8 175 41.7
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 7.7e-19 97.8 176 41.5
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.0e-18 97.4 176 42.0
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.3e-18 97.1 173 46.8
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-18 97.1 176 41.5
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.3e-18 97.1 176 41.5
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.3e-18 97.1 181 42.0
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.7e-18 96.7 178 41.0
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 2.2e-18 96.3 174 42.5
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 3.8e-18 95.5 163 44.8
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 5.0e-18 95.1 177 43.5
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 8.5e-18 94.4 160 45.0
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 8.5e-18 94.4 176 44.9
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 8.5e-18 94.4 176 42.6
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 8.5e-18 94.4 174 42.0
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 8.5e-18 94.4 156 44.9
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-17 93.6 177 42.9
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 1.4e-17 93.6 177 42.9
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.4e-17 93.6 178 37.6
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-17 93.2 177 42.9
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.9e-17 93.2 177 42.9
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.9e-17 93.2 184 41.3
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.9e-17 93.2 160 44.4
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.5e-17 92.8 172 41.9
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.5e-17 92.8 172 41.9
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 3.2e-17 92.4 115 48.7
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 4.2e-17 92.0 180 41.1
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 7.2e-17 91.3 177 42.4
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 7.2e-17 91.3 175 40.0
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 9.4e-17 90.9 175 40.6
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 9.4e-17 90.9 175 40.6
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 9.4e-17 90.9 175 40.6
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 9.4e-17 90.9 172 41.9
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.2e-16 90.5 172 41.9
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.6e-16 90.1 140 43.6
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 2.1e-16 89.7 172 44.2
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 2.1e-16 89.7 170 41.2
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.7e-16 89.4 139 45.3
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 2.7e-16 89.4 178 39.3
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 4.7e-16 88.6 176 40.3
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 6.1e-16 88.2 170 41.2
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 6.1e-16 88.2 175 42.9
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 8.0e-16 87.8 130 46.2
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 8.0e-16 87.8 173 40.5
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 8.0e-16 87.8 171 42.1
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-15 87.4 178 40.4
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 1.0e-15 87.4 178 40.4
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-15 87.0 168 43.5
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.4e-15 87.0 187 39.6
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.4e-15 87.0 167 41.3
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.4e-15 87.0 188 41.0
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 3.9e-15 85.5 180 41.1
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 3.9e-15 85.5 180 41.1
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 3.9e-15 85.5 171 41.5
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 5.2e-15 85.1 166 43.4
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.2e-15 85.1 173 42.8
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 6.7e-15 84.7 175 38.9
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 6.7e-15 84.7 175 38.9
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 6.7e-15 84.7 142 40.8
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 8.8e-15 84.3 166 39.8
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 8.8e-15 84.3 76 61.8
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.1e-14 84.0 172 39.5
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.1e-14 84.0 147 42.2
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 2.6e-14 82.8 175 38.3
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.6e-14 82.8 178 39.3
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 2.6e-14 82.8 175 38.3
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 2.6e-14 82.8 152 44.1
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 3.3e-14 82.4 154 43.5
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 3.3e-14 82.4 188 37.2
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 7.4e-14 81.3 189 37.6
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.7e-13 80.1 123 46.3
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.7e-13 80.1 159 40.9
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 2.8e-13 79.3 133 38.3
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 2.8e-13 79.3 171 38.0
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.7e-13 79.0 122 45.1
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.8e-13 78.6 137 42.3
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 4.8e-13 78.6 175 38.3
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 6.3e-13 78.2 81 54.3
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 8.2e-13 77.8 162 40.1
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.1e-12 77.4 69 65.2
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.4e-12 77.0 170 38.8
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.4e-12 76.3 166 39.2
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.6e-11 73.6 82 53.7
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 5.9e-11 71.6 69 59.4
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 7.7e-11 71.2 69 56.5
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.7e-10 70.1 178 35.4
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 8.5e-10 67.8 170 39.4
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 2.5e-09 66.2 160 36.9
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 5.5e-09 65.1 157 37.6
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 2.0e-06 56.6 127 38.6
unitig_8.g3466 Utricularia gibba HOM05D005097 ORTHO05D006186 9.7e-06 54.3 146 32.9


User provided reference genes

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