Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049815 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D003046 1.3e-20 102.1 51 100.0
Actinidia19141 Actinidia chinensis HOM05D000663 ORTHO05D003046 5.1e-12 73.6 38 94.7
Actinidia30990 Actinidia chinensis HOM05D000663 ORTHO05D003046 1.1e-11 72.4 38 94.7
CiPaw.01G029800 Carya illinoinensis HOM05D000663 ORTHO05D003046 1.1e-11 72.4 42 83.3
Sc16g0001230 Simmondsia chinensis HOM05D000663 ORTHO05D003046 1.5e-11 72.0 42 81.0
CSS0019577 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D003046 1.9e-11 71.6 38 94.7
CSS0019667 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D003046 1.9e-11 71.6 38 94.7
Cc07_g05340 Coffea canephora HOM05D000663 ORTHO05D003046 1.9e-11 71.6 38 94.7
Haze_15160 Corylus avellana HOM05D000663 ORTHO05D003046 4.3e-11 70.5 38 89.5
Oeu043826.1 Olea europaea HOM05D000663 ORTHO05D003046 4.3e-11 70.5 38 89.5
Sed0016398 Sechium edule HOM05D000663 ORTHO05D003046 4.3e-11 70.5 39 82.1
Ca_29957_v3 Cicer arietinum L. HOM05D000663 ORTHO05D003046 5.6e-11 70.1 42 76.2
ClCG01G016360 Citrullus lanatus HOM05D000663 ORTHO05D003046 5.6e-11 70.1 38 86.8
MELO3C007506.2 Cucumis melo HOM05D000663 ORTHO05D003046 5.6e-11 70.1 38 86.8
CsaV3_6G042670 Cucumis sativus L. HOM05D000663 ORTHO05D003046 5.6e-11 70.1 38 86.8
Psat4g089920 Pisum sativum HOM05D000663 ORTHO05D003046 5.6e-11 70.1 42 76.2
COL.COLO4_22172 Corchorus olitorius HOM05D000663 ORTHO05D003046 7.3e-11 69.7 46 78.3
FvH4_1g14420 Fragaria vesca HOM05D000663 ORTHO05D003046 7.3e-11 69.7 38 89.5
FAN19G1452 Fragaria x ananassa HOM05D000663 ORTHO05D003046 7.3e-11 69.7 38 89.5
FAN26G1954 Fragaria x ananassa HOM05D000663 ORTHO05D003046 7.3e-11 69.7 38 89.5
Gohir.D10G094100 Gossypium hirsutum HOM05D000663 ORTHO05D003046 7.3e-11 69.7 46 78.3
Gorai.011G103200 Gossypium raimondii HOM05D000663 ORTHO05D003046 7.3e-11 69.7 46 78.3
MD02G1157700 Malus domestica HOM05D000663 ORTHO05D003046 7.3e-11 69.7 38 89.5
MD15G1272400 Malus domestica HOM05D000663 ORTHO05D003046 7.3e-11 69.7 38 89.5
Medtr8g078830 Medicago truncatula HOM05D000663 ORTHO05D003046 7.3e-11 69.7 42 76.2
Hund16567 Selenicereus undatus HOM05D000663 ORTHO05D003046 7.3e-11 69.7 38 86.8
Sc03g0001120 Simmondsia chinensis HOM05D000663 ORTHO05D003046 7.3e-11 69.7 42 76.2
Dinv26781 Davidia involucrata HOM05D000663 ORTHO05D003046 9.6e-11 69.3 38 89.5
RcHm_v2.0_Chr2g0103141 Rosa chinensis HOM05D000663 ORTHO05D003046 1.3e-10 68.9 38 86.8
Thecc.01G045200 Theobroma cacao HOM05D000663 ORTHO05D003046 1.3e-10 68.9 46 78.3
TPR.G11246 Trifolium pratense HOM05D000663 ORTHO05D003046 1.3e-10 68.9 42 73.8
Glyma.02G061000 Glycine max HOM05D000663 ORTHO05D003046 1.6e-10 68.6 39 82.1
Glyma.16G143500 Glycine max HOM05D000663 ORTHO05D003046 1.6e-10 68.6 39 82.1
Gohir.A10G094000 Gossypium hirsutum HOM05D000663 ORTHO05D003046 1.6e-10 68.6 46 78.3
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.6e-10 68.6 42 78.6
Nitab4.5_0003580g0060 Nicotiana tabacum HOM05D000663 ORTHO05D003046 1.6e-10 68.6 42 78.6
Phvul.003G249900 Phaseolus vulgaris HOM05D000663 ORTHO05D003046 1.6e-10 68.6 39 82.1
VMungo0251G3720 Vigna mungo HOM05D000663 ORTHO05D003046 1.6e-10 68.6 39 82.1
Nitab4.5_0000108g0120 Nicotiana tabacum HOM05D000663 ORTHO05D003046 2.1e-10 68.2 42 78.6
Prupe.7G146000 Prunus persica HOM05D000663 ORTHO05D003046 2.1e-10 68.2 38 84.2
Migut.H00508 Erythranthe guttata HOM05D000663 ORTHO05D003046 2.8e-10 67.8 38 86.8
Gohir.A11G188000 Gossypium hirsutum HOM05D000663 ORTHO05D003046 2.8e-10 67.8 46 76.1
Gohir.D05G346200 Gossypium hirsutum HOM05D000663 ORTHO05D003046 2.8e-10 67.8 46 76.1
Gohir.D11G194500 Gossypium hirsutum HOM05D000663 ORTHO05D003046 2.8e-10 67.8 46 76.1
Gorai.007G207900 Gossypium raimondii HOM05D000663 ORTHO05D003046 2.8e-10 67.8 46 76.1
SalBow1G5966 Salvia bowleyana HOM05D000663 ORTHO05D003046 2.8e-10 67.8 38 84.2
GSVIVG01003767001 Vitis vinifera HOM05D000663 ORTHO05D003046 2.8e-10 67.8 38 84.2
Duzib147G0742 Durio zibethinus HOM05D000663 ORTHO05D003046 3.6e-10 67.4 49 71.4
TWI09G0825 Tripterygium wilfordii HOM05D000663 ORTHO05D003046 3.6e-10 67.4 42 76.2
AUR62027246 Chenopodium quinoa HOM05D000663 ORTHO05D003046 4.8e-10 67.0 56 58.9
CiPaw.02G013500 Carya illinoinensis HOM05D000663 ORTHO05D003046 6.2e-10 66.6 42 73.8
AUR62003228 Chenopodium quinoa HOM05D000663 ORTHO05D003046 6.2e-10 66.6 38 81.6
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.2e-10 66.6 41 78.0
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 6.2e-10 66.6 41 78.0
SGA_v2.0_scaffold15G07194 Striga asiatica HOM05D000663 ORTHO05D003046 6.2e-10 66.6 38 86.8
MSTRG.2925 Avicennia marina HOM05D000663 ORTHO05D003046 8.1e-10 66.2 38 84.2
EL10Ac6g14854 Beta vulgaris HOM05D000663 ORTHO05D003046 8.1e-10 66.2 39 76.9
Duzib264G0513 Durio zibethinus HOM05D000663 ORTHO05D003046 8.1e-10 66.2 46 73.9
Manes.12G097100 Manihot esculenta HOM05D000663 ORTHO05D003046 8.1e-10 66.2 38 78.9
ECA232G4605 Erigeron canadensis HOM05D000663 ORTHO05D003046 1.1e-09 65.9 42 76.2
Lj4g0026555 Lotus japonicus HOM05D000663 ORTHO05D003046 1.1e-09 65.9 39 79.5
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.4e-09 65.5 42 76.2
QL06p044322 Quercus lobata HOM05D000663 ORTHO05D003046 1.4e-09 65.5 42 76.2
Duzib187G0410 Durio zibethinus HOM05D000663 ORTHO05D003046 1.8e-09 65.1 46 73.9
MSTRG.23809 Avicennia marina HOM05D000663 ORTHO05D003046 2.4e-09 64.7 38 81.6
Gohir.D06G092600 Gossypium hirsutum HOM05D000663 ORTHO05D003046 2.4e-09 64.7 43 76.7
Manes.13G132800 Manihot esculenta HOM05D000663 ORTHO05D003046 2.4e-09 64.7 38 78.9
PGSC0003DMG400010037 Solanum tuberosum HOM05D000663 ORTHO05D003046 2.4e-09 64.7 38 81.6
Gorai.010G107000 Gossypium raimondii HOM05D000663 ORTHO05D003046 3.1e-09 64.3 42 71.4
Solyc02g090000.3 Solanum lycopersicum HOM05D000663 ORTHO05D003046 3.1e-09 64.3 38 81.6
Sopen02g034690 Solanum pennellii HOM05D000663 ORTHO05D003046 3.1e-09 64.3 38 81.6
Psat2g163560 Pisum sativum HOM05D000663 ORTHO05D003046 4.0e-09 63.9 42 73.8
TPR.G29854 Trifolium pratense HOM05D000663 ORTHO05D003046 4.0e-09 63.9 42 73.8
arahy.Tifrunner.gnm1.ann1.8L03H9 Arachis hypogaea HOM05D000663 ORTHO05D003046 5.3e-09 63.5 38 76.3
Lsat_1_v5_gn_4_179181 Lactuca sativa HOM05D000663 ORTHO05D003046 5.3e-09 63.5 41 73.2
Medtr5g018680 Medicago truncatula HOM05D000663 ORTHO05D003046 5.3e-09 63.5 42 73.8
HanXRQChr09g0264361 Helianthus annuus HOM05D000663 ORTHO05D003046 6.9e-09 63.2 41 75.6
DCAR_025667 Daucus carota HOM05D000663 ORTHO05D003046 9.0e-09 62.8 44 68.2
Lalb_Chr05g0227311 Lupinus albus HOM05D000663 ORTHO05D003046 1.2e-08 62.4 42 69.0
Oeu032912.1 Olea europaea HOM05D000663 ORTHO05D003046 1.5e-08 62.0 38 76.3
TAR381G1418 Trochodendron aralioides HOM05D000663 ORTHO05D003046 1.5e-08 62.0 38 81.6
CSS0033477 Camellia sinensis var. sinensis HOM05D000663 ORTHO05D003046 2.0e-08 61.6 50 60.0
CANSAT01G1081 Cannabis sativa HOM05D000663 ORTHO05D003046 2.0e-08 61.6 38 76.3
Hma1.2p1_0584F.1_g183360 Hydrangea macrophylla HOM05D000663 ORTHO05D003046 2.6e-08 61.2 42 71.4
Glyma.01G180700 Glycine max HOM05D000663 ORTHO05D003046 4.4e-08 60.5 38 76.3
DCAR_029003 Daucus carota HOM05D000663 ORTHO05D003046 5.8e-08 60.1 42 71.4
arahy.Tifrunner.gnm1.ann1.L8FFLZ Arachis hypogaea HOM05D000663 ORTHO05D003046 7.6e-08 59.7 38 76.3
arahy.Tifrunner.gnm1.ann1.R6Y0SS Arachis hypogaea HOM05D000663 ORTHO05D003046 7.6e-08 59.7 38 76.3
Lj7C14G9 Lonicera japonica HOM05D000663 ORTHO05D003046 7.6e-08 59.7 39 79.5
MD10G1084900 Malus domestica HOM05D000663 ORTHO05D003046 7.6e-08 59.7 38 76.3
Prupe.8G107800 Prunus persica HOM05D000663 ORTHO05D003046 7.6e-08 59.7 38 76.3
Ciclev10026699m.g Citrus clementina HOM05D000663 ORTHO05D003046 9.9e-08 59.3 42 69.0
Lsat_1_v5_gn_3_93761 Lactuca sativa HOM05D000663 ORTHO05D003046 9.9e-08 59.3 41 65.9
Nn5g29448 Nelumbo nucifera HOM05D000663 ORTHO05D003046 9.9e-08 59.3 37 81.1
Nn6g32179 Nelumbo nucifera HOM05D000663 ORTHO05D003046 9.9e-08 59.3 38 76.3
Sopen02g015620 Solanum pennellii HOM05D000663 ORTHO05D003046 9.9e-08 59.3 46 67.4
ECA246G2035 Erigeron canadensis HOM05D000091 ORTHO05D006279 1.3e-07 58.9 38 73.7
HanXRQChr02g0035551 Helianthus annuus HOM05D000663 ORTHO05D003046 1.3e-07 58.9 41 68.3
Manes.15G146600 Manihot esculenta HOM05D000663 ORTHO05D003046 1.3e-07 58.9 38 71.1
TAR628G0318 Trochodendron aralioides HOM05D000663 ORTHO05D003046 1.3e-07 58.9 38 78.9
Thhalv10010793m.g Eutrema salsugineum HOM05D000663 ORTHO05D003046 1.7e-07 58.5 38 71.1
PGR042G1246 Punica granatum HOM05D000663 ORTHO05D003046 1.7e-07 58.5 39 69.2
Actinidia17836 Actinidia chinensis HOM05D000663 ORTHO05D003046 2.2e-07 58.2 45 60.0
Cfa004965 Carpinus fangiana HOM05D000663 ORTHO05D003046 2.2e-07 58.2 38 73.7
Dinv23569 Davidia involucrata HOM05D000663 ORTHO05D003046 2.2e-07 58.2 42 69.0
Eucgr.I01232 Eucalyptus grandis HOM05D000663 ORTHO05D003046 2.2e-07 58.2 38 73.7
Glyma.11G122200 Glycine max HOM05D000663 ORTHO05D003046 2.2e-07 58.2 38 73.7
GSVIVG01031895001 Vitis vinifera HOM05D000663 ORTHO05D003046 2.2e-07 58.2 38 73.7
Dinv42101 Davidia involucrata HOM05D000663 ORTHO05D003046 2.9e-07 57.8 38 73.7
HanXRQChr12g0378441 Helianthus annuus HOM05D000663 ORTHO05D003046 2.9e-07 57.8 40 65.0
Lj3g0009223 Lotus japonicus HOM05D000663 ORTHO05D003046 2.9e-07 57.8 42 69.0
Nitab4.5_0000090g0110 Nicotiana tabacum HOM05D000663 ORTHO05D003046 2.9e-07 57.8 44 70.5
Solyc02g065420.3 Solanum lycopersicum HOM05D000663 ORTHO05D003046 2.9e-07 57.8 46 67.4
CiPaw.06G138600 Carya illinoinensis HOM05D000663 ORTHO05D003046 3.8e-07 57.4 38 73.7
Lj5A203G55 Lonicera japonica HOM05D000663 ORTHO05D003046 3.8e-07 57.4 42 64.3
MBI16_g13166_MAGBIO Magnolia biondii HOM05D000663 ORTHO05D003046 3.8e-07 57.4 38 71.1
Phvul.011G049100 Phaseolus vulgaris HOM05D000663 ORTHO05D003046 3.8e-07 57.4 38 71.1
PGSC0003DMG400002781 Solanum tuberosum HOM05D000663 ORTHO05D003046 3.8e-07 57.4 46 65.2
Actinidia12092 Actinidia chinensis HOM05D000663 ORTHO05D003046 4.9e-07 57.0 42 66.7
BcaB01g00578 Brassica carinata HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 68.4
BcaC07g39544 Brassica carinata HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 68.4
BcaC07g39545 Brassica carinata HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 68.4
A09p43890 Brassica napus HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 68.4
C08p26000 Brassica napus HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 68.4
BolC8t50216H Brassica oleracea HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 68.4
BraA09t39849Z Brassica rapa HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 68.4
Haze_02437 Corylus avellana HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 71.1
Lsat_1_v5_gn_7_88660 Lactuca sativa HOM05D000663 ORTHO05D003046 4.9e-07 57.0 42 64.3
Oeu034078.2 Olea europaea HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 73.7
Potri.009G110200 Populus trichocarpa HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 71.1
Sabra07G0029300 Salix brachista HOM05D000663 ORTHO05D003046 4.9e-07 57.0 37 67.6
Sabra09G0084200 Salix brachista HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 71.1
Sp5g11410 Schrenkiella parvula HOM05D000663 ORTHO05D003046 4.9e-07 57.0 38 68.4
Glyma.11G061400 Glycine max HOM05D000663 ORTHO05D003046 6.4e-07 56.6 38 71.1
Lalb_Chr01g0002881 Lupinus albus HOM05D000663 ORTHO05D003046 6.4e-07 56.6 38 71.1
Nitab4.5_0003281g0030 Nicotiana tabacum HOM05D000663 ORTHO05D003046 6.4e-07 56.6 37 75.7
Nitab4.5_0003816g0130 Nicotiana tabacum HOM05D000663 ORTHO05D003046 6.4e-07 56.6 37 75.7
PSO170G2038 Papaver somniferum HOM05D000663 ORTHO05D003046 6.4e-07 56.6 48 68.8
QL11p039606 Quercus lobata HOM05D000663 ORTHO05D003046 6.4e-07 56.6 38 71.1
Actinidia27918 Actinidia chinensis HOM05D000663 ORTHO05D003046 8.4e-07 56.2 38 68.4
Ciclev10029477m.g Citrus clementina HOM05D000663 ORTHO05D003046 8.4e-07 56.2 41 65.9
Aqoxy5G01739 Aquilegia oxysepala HOM05D000663 ORTHO05D003046 1.1e-06 55.8 38 68.4
HanXRQChr16g0506131 Helianthus annuus HOM05D000663 ORTHO05D003046 1.1e-06 55.8 42 64.3
TPR.G29892 Trifolium pratense HOM05D000663 ORTHO05D003046 1.1e-06 55.8 38 68.4
AL5G31040 Arabidopsis lyrata HOM05D000663 ORTHO05D003046 1.4e-06 55.5 38 65.8
AT3G50810 Arabidopsis thaliana HOM05D000663 ORTHO05D003046 1.4e-06 55.5 38 65.8
Glyma.12G047000 Glycine max HOM05D000663 ORTHO05D003046 1.4e-06 55.5 38 71.1
Potri.004G149332 Populus trichocarpa HOM05D000663 ORTHO05D003046 1.4e-06 55.5 38 71.1
CiPaw.05G059600 Carya illinoinensis HOM05D000663 ORTHO05D003046 1.9e-06 55.1 38 65.8
FvH4_2g07710 Fragaria vesca HOM05D000663 ORTHO05D003046 1.9e-06 55.1 36 75.0
FAN15G1372 Fragaria x ananassa HOM05D000663 ORTHO05D003046 1.9e-06 55.1 36 75.0
FAN20G0225 Fragaria x ananassa HOM05D000663 ORTHO05D003046 1.9e-06 55.1 36 75.0
Manes.17G097800 Manihot esculenta HOM05D000663 ORTHO05D003046 1.9e-06 55.1 38 68.4
Medtr4g068780 Medicago truncatula HOM05D000663 ORTHO05D003046 1.9e-06 55.1 38 68.4
RcHm_v2.0_Chr6g0262031 Rosa chinensis HOM05D000663 ORTHO05D003046 1.9e-06 55.1 36 75.0
TWI79G1154 Tripterygium wilfordii HOM05D000663 ORTHO05D003046 1.9e-06 55.1 38 68.4
arahy.Tifrunner.gnm1.ann1.XTK3T9 Arachis hypogaea HOM05D000663 ORTHO05D003046 2.4e-06 54.7 38 65.8
Duzib132G0384 Durio zibethinus HOM05D000663 ORTHO05D003046 2.4e-06 54.7 42 61.9
Aa31LG4G18940 Aethionema arabicum HOM05D000663 ORTHO05D003046 3.2e-06 54.3 38 65.8
ClCG09G017920 Citrullus lanatus HOM05D000663 ORTHO05D003046 3.2e-06 54.3 38 65.8
Gorai.009G408600 Gossypium raimondii HOM05D000663 ORTHO05D003046 3.2e-06 54.3 40 72.5
Peaxi162Scf00684g00560 Petunia axillaris HOM05D000663 ORTHO05D003046 3.2e-06 54.3 36 75.0
Atru.chr3.478 Acer truncatum HOM05D000663 ORTHO05D003046 4.2e-06 53.9 39 66.7
Carub.0005s1717 Capsella rubella HOM05D000663 ORTHO05D003046 4.2e-06 53.9 38 63.2
CARHR160350 Cardamine hirsuta HOM05D000663 ORTHO05D003046 4.2e-06 53.9 38 63.2
Rhsim05G0078000 Rhododendron simsii HOM05D000663 ORTHO05D003046 4.2e-06 53.9 46 58.7
Atru.chr5.2908 Acer truncatum HOM05D000663 ORTHO05D003046 5.4e-06 53.5 37 70.3
PSO700G0388 Papaver somniferum HOM05D000663 ORTHO05D003046 5.4e-06 53.5 40 72.5
Potri.007G033600 Populus trichocarpa HOM05D000663 ORTHO05D003046 5.4e-06 53.5 36 69.4
THA.LOC104807996 Tarenaya hassleriana HOM05D000663 ORTHO05D003046 5.4e-06 53.5 38 63.2
THA.LOC104821284 Tarenaya hassleriana HOM05D000663 ORTHO05D003046 5.4e-06 53.5 38 63.2
Peaxi162Scf00016g01134 Petunia axillaris HOM05D000663 ORTHO05D003046 7.1e-06 53.1 37 70.3
Thecc.02G030200 Theobroma cacao HOM05D000663 ORTHO05D003046 7.1e-06 53.1 38 65.8
ECA236G3327 Erigeron canadensis HOM05D000663 ORTHO05D000001 9.3e-06 52.8 42 61.9


User provided reference genes

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