Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 3.0e-232 808.1 400 100.0
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 5.8e-204 714.1 400 87.0
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 3.2e-194 681.8 400 84.5
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 1.0e-184 650.2 402 80.8
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 3.0e-184 648.7 408 79.7
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 5.1e-184 647.9 398 79.1
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 6.9e-181 637.5 403 78.4
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.2e-180 636.7 403 78.4
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 1.6e-177 626.3 402 78.1
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.7e-177 625.5 386 79.8
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.8e-176 622.9 417 75.1
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.5e-175 619.8 397 76.8
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.5e-175 619.0 400 79.2
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 4.8e-174 614.8 402 75.9
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 3.1e-173 612.1 405 76.8
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 5.3e-173 611.3 405 77.5
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 6.9e-173 610.9 403 76.9
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 6.9e-173 610.9 402 76.6
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 9.0e-173 610.5 403 74.7
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 9.0e-173 610.5 405 76.8
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 2.0e-172 609.4 393 77.4
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.7e-171 606.3 403 76.2
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 5.0e-171 604.7 395 75.9
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 6.5e-171 604.4 403 75.9
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.9e-170 602.8 398 73.4
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.9e-170 602.8 403 74.7
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 2.5e-170 602.4 406 74.4
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 2.5e-170 602.4 402 74.6
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.5e-170 602.4 405 76.0
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.6e-169 599.7 386 78.2
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 4.6e-169 598.2 398 74.6
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 7.9e-169 597.4 403 75.9
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.8e-168 596.3 403 75.4
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 2.3e-168 595.9 400 76.0
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 3.0e-168 595.5 382 77.5
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 3.9e-168 595.1 398 72.6
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 3.9e-168 595.1 401 73.8
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 3.9e-168 595.1 402 73.4
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 2.5e-167 592.4 372 78.2
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 2.5e-167 592.4 403 75.2
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 4.3e-167 591.7 356 81.5
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 5.7e-167 591.3 404 73.5
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 2.2e-166 589.3 404 72.8
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.2e-166 589.3 366 78.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 2.2e-166 589.3 404 72.5
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.8e-166 589.0 366 79.5
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 5.3e-165 584.7 398 71.6
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 2.0e-164 582.8 407 72.2
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 5.9e-164 581.3 404 71.8
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.3e-163 580.1 405 71.4
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.4e-162 576.6 404 71.0
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.9e-162 576.2 404 71.5
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 3.2e-162 575.5 405 71.9
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 5.5e-162 574.7 400 70.8
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 5.5e-162 574.7 405 74.1
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 9.4e-162 573.9 402 71.4
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.6e-161 573.2 347 79.5
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.6e-161 573.2 347 79.5
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 2.1e-161 572.8 354 79.9
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.6e-161 572.0 403 71.0
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 6.1e-161 571.2 406 70.7
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 6.1e-161 571.2 418 70.8
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 6.1e-161 571.2 390 74.4
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 7.9e-161 570.9 398 72.4
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.0e-160 570.5 401 70.8
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.0e-160 570.5 385 74.5
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.4e-160 570.1 405 71.4
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.8e-160 569.7 399 70.7
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.8e-160 569.7 399 69.9
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 2.3e-160 569.3 398 70.1
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 3.0e-160 568.9 378 73.3
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 3.9e-160 568.5 366 77.0
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 6.7e-160 567.8 378 73.0
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 8.8e-160 567.4 405 70.1
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.1e-159 567.0 402 70.6
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 3.3e-159 565.5 430 67.2
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 4.4e-159 565.1 351 76.1
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 5.7e-159 564.7 386 72.5
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 5.7e-159 564.7 354 76.6
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 5.7e-159 564.7 401 69.8
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 7.4e-159 564.3 347 77.8
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 7.4e-159 564.3 399 69.2
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 9.7e-159 563.9 369 74.5
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 9.7e-159 563.9 402 69.9
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 8.2e-158 560.8 403 70.5
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 1.8e-157 559.7 418 69.9
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.8e-157 559.7 347 77.2
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.4e-157 559.3 340 80.6
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 9.1e-157 557.4 403 69.7
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 2.0e-156 556.2 327 82.9
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 2.2e-155 552.7 379 71.0
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 2.9e-155 552.4 409 69.4
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 2.9e-155 552.4 370 74.6
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 6.5e-155 551.2 350 76.3
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 6.5e-155 551.2 363 75.8
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.5e-154 550.1 366 74.6
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 9.4e-154 547.4 398 69.1
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 2.1e-153 546.2 368 72.3
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.7e-153 545.8 380 73.2
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 3.7e-150 535.4 360 74.2
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 2.4e-149 532.7 462 61.7
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 4.1e-149 531.9 367 70.8
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 1.2e-148 530.4 365 70.4
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 5.9e-148 528.1 293 89.4
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 7.7e-148 527.7 389 67.6
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.0e-147 527.3 314 80.9
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.7e-147 526.6 415 64.1
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 2.9e-147 525.8 344 73.0
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.2e-143 513.8 382 69.1
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.8e-142 509.2 354 73.7
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 6.3e-142 508.1 407 65.1
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 8.3e-142 507.7 354 73.7
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.6e-140 503.4 345 69.0
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.0e-139 500.7 314 78.3
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.0e-136 489.2 573 48.9
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 9.5e-130 467.6 351 65.2
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.6e-124 450.3 350 63.4
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.6e-116 423.7 286 73.8
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.9e-114 416.8 362 63.5
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.1e-88 329.7 194 86.6
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.9e-66 257.3 147 82.3
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 4.3e-66 256.1 373 43.2
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 1.0e-62 245.0 299 50.2
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 2.5e-61 240.4 220 54.1
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 9.4e-53 211.8 188 61.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 1.5e-50 204.5 132 76.5
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 7.4e-50 202.2 112 87.5
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.2e-47 194.9 112 86.6
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.3e-33 148.3 120 64.2
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 2.2e-33 147.5 71 100.0
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 5.9e-31 139.4 350 29.7
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 7.7e-31 139.0 81 77.8
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.8e-24 117.9 66 77.3
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 6.3e-17 92.8 132 43.9
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 5.0e-14 83.2 53 77.4
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 9.8e-10 68.9 43 69.8
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 3.2e-08 63.9 40 70.0


User provided reference genes

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