Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049796 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.8e-63 245.7 120 100.0
CSS0049937 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 6.3e-45 184.1 124 79.0
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.2e-42 175.6 122 73.0
CSS0029567 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.1e-40 169.1 122 75.4
CSS0045169 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 2.1e-40 169.1 122 75.4
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 1.2e-35 153.3 128 60.9
CSS0030372 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 7.7e-35 150.6 131 67.2
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 5.5e-33 144.4 122 59.0
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 5.2e-31 137.9 127 54.3
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 5.0e-26 121.3 124 50.0
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 6.5e-26 120.9 121 46.3
Sopen06g017040 Solanum pennellii HOM05D002350 ORTHO05D000091 6.5e-26 120.9 121 46.3
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 1.1e-25 120.2 122 51.6
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 2.5e-25 119.0 124 49.2
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 1.4e-23 113.2 119 48.7
Nitab4.5_0000165g0050 Nicotiana tabacum HOM05D002350 ORTHO05D000091 3.0e-23 112.1 118 44.9
Nitab4.5_0001354g0030 Nicotiana tabacum HOM05D002350 ORTHO05D000091 6.7e-23 110.9 118 44.9
Peaxi162Scf00824g00113 Petunia axillaris HOM05D002350 ORTHO05D000091 6.7e-23 110.9 117 47.0
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 4.4e-22 108.2 121 46.3
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 9.7e-22 107.1 109 52.3
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 1.3e-21 106.7 123 46.3
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 3.7e-21 105.1 115 48.7
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 6.3e-21 104.4 119 43.7
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 1.4e-20 103.2 118 42.4
PSO832G0190 Papaver somniferum HOM05D002350 ORTHO05D000091 3.1e-20 102.1 95 47.4
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 5.3e-20 101.3 111 48.6
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 7.0e-20 100.9 120 43.3
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 1.2e-19 100.1 124 44.4
HanXRQChr16g0503801 Helianthus annuus HOM05D002350 ORTHO05D000091 1.6e-19 99.8 123 43.1
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.6e-19 99.8 114 47.4
PGSC0003DMG402000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 1.6e-19 99.8 129 45.0
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 2.7e-19 99.0 132 42.4
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 2.7e-19 99.0 118 45.8
SGA_v2.0_scaffold501G52502 Striga asiatica HOM05D002350 ORTHO05D000091 3.5e-19 98.6 119 37.8
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 4.5e-19 98.2 111 48.6
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 5.9e-19 97.8 120 39.2
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 7.7e-19 97.4 124 43.5
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 7.7e-19 97.4 114 46.5
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 1.0e-18 97.1 108 49.1
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 1.7e-18 96.3 123 40.7
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 2.9e-18 95.5 121 44.6
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 5.0e-18 94.7 120 41.7
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 8.5e-18 94.0 124 41.9
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 1.5e-17 93.2 119 39.5
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 1.9e-17 92.8 111 44.1
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 3.2e-17 92.0 118 40.7
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 4.2e-17 91.7 120 43.3
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 5.5e-17 91.3 120 41.7
DCAR_018379 Daucus carota HOM05D002350 ORTHO05D000091 5.5e-17 91.3 104 47.1
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 5.5e-17 91.3 112 44.6
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 9.4e-17 90.5 115 41.7
CAN.G160.38 Capsicum annuum HOM05D002350 ORTHO05D000091 2.1e-16 89.4 109 44.0
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 2.1e-16 89.4 82 48.8
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 2.7e-16 89.0 120 38.3
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 6.1e-16 87.8 118 38.1
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 1.0e-15 87.0 118 39.0
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 3.0e-15 85.5 122 42.6
DCAR_010692 Daucus carota HOM05D002350 ORTHO05D000091 2.6e-14 82.4 111 39.6
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 7.5e-14 80.9 121 38.0
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 1.3e-13 80.1 125 36.8
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 1.7e-13 79.7 118 38.1
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 1.7e-13 79.7 118 38.1
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 4.8e-13 78.2 119 37.8
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 6.3e-13 77.8 118 36.4
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 6.3e-13 77.8 121 33.9
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 6.3e-13 77.8 108 36.1
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 8.3e-13 77.4 122 36.1
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 8.3e-13 77.4 122 36.1
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 8.3e-13 77.4 122 35.2
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 8.3e-13 77.4 129 37.2
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 1.1e-12 77.0 122 35.2
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 1.1e-12 77.0 115 36.5
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 1.1e-12 77.0 122 36.1
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 1.4e-12 76.6 115 37.4
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 1.4e-12 76.6 125 35.2
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 1.8e-12 76.3 111 36.9
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 2.4e-12 75.9 113 36.3
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 2.4e-12 75.9 118 35.6
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 2.4e-12 75.9 118 35.6
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 2.4e-12 75.9 118 34.7
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 3.1e-12 75.5 123 33.3
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 4.1e-12 75.1 109 39.4
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 4.1e-12 75.1 118 34.7
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 5.4e-12 74.7 118 34.7
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 5.4e-12 74.7 131 33.6
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 7.0e-12 74.3 121 33.1
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 7.0e-12 74.3 119 32.8
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 9.1e-12 73.9 118 33.9
A07p00780 Brassica napus HOM05D002350 ORTHO05D000091 9.1e-12 73.9 118 33.9
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 9.1e-12 73.9 118 33.9
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 9.1e-12 73.9 118 33.9
BraA07t27876Z Brassica rapa HOM05D002350 ORTHO05D000091 9.1e-12 73.9 118 33.9
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 9.1e-12 73.9 104 40.4
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 1.2e-11 73.6 124 30.6
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.6e-11 73.2 117 34.2
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 1.6e-11 73.2 104 40.4
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 1.6e-11 73.2 78 44.9
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 1.6e-11 73.2 113 32.7
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 2.0e-11 72.8 131 32.1
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 2.0e-11 72.8 81 43.2
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 2.0e-11 72.8 122 33.6
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 2.0e-11 72.8 118 36.4
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 2.0e-11 72.8 121 32.2
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 2.7e-11 72.4 119 31.9
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 3.5e-11 72.0 109 34.9
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 4.5e-11 71.6 121 32.2
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 4.5e-11 71.6 125 31.2
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 4.5e-11 71.6 117 34.2
SEGI_05646 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 4.5e-11 71.6 115 39.1
SEGI_17992 Sequoiadendron giganteum HOM05D002350 ORTHO05D000091 4.5e-11 71.6 115 39.1
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 5.9e-11 71.2 104 39.4
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 5.9e-11 71.2 103 33.0
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.0e-10 70.5 118 32.2
BolC7t40573H Brassica oleracea HOM05D002350 ORTHO05D000091 1.0e-10 70.5 111 35.1
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 1.3e-10 70.1 118 33.9
Sabra06G0125300 Salix brachista HOM05D002350 ORTHO05D000091 1.3e-10 70.1 104 38.5
Aqoxy6G02290 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 1.7e-10 69.7 69 46.4
C07p01730 Brassica napus HOM05D002350 ORTHO05D000091 2.3e-10 69.3 87 37.9
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 2.3e-10 69.3 81 40.7
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 2.3e-10 69.3 75 45.3
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 2.9e-10 68.9 104 38.5
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 2.9e-10 68.9 105 34.3
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 2.9e-10 68.9 81 40.7
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 3.8e-10 68.6 125 34.4
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 5.0e-10 68.2 121 31.4
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 5.0e-10 68.2 115 36.5
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 6.6e-10 67.8 122 32.0
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 8.6e-10 67.4 118 30.5
BcaC06g36662 Brassica carinata HOM05D002350 ORTHO05D000091 8.6e-10 67.4 107 35.5
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 8.6e-10 67.4 115 34.8
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 1.1e-09 67.0 85 40.0
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 1.5e-09 66.6 119 31.1
EL10Ac8g18396 Beta vulgaris HOM05D002350 ORTHO05D000091 1.9e-09 66.2 69 44.9
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 1.9e-09 66.2 119 30.3
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 1.9e-09 66.2 103 37.9
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 2.5e-09 65.9 115 33.9
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 2.5e-09 65.9 99 36.4
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 3.3e-09 65.5 119 30.3
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 5.5e-09 64.7 103 33.0
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 5.5e-09 64.7 114 31.6
CDE05G2422 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 7.2e-09 64.3 54 51.9
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 2.1e-08 62.8 107 34.6
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 4.7e-08 61.6 115 33.9
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 4.7e-08 61.6 115 33.9
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 4.7e-08 61.6 119 32.8
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 6.1e-08 61.2 105 35.2
Sc08g0007950 Simmondsia chinensis HOM05D002350 ORTHO05D000091 6.1e-08 61.2 124 29.0
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 8.0e-08 60.8 137 31.4
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 1.4e-07 60.1 134 32.1
RcHm_v2.0_Chr2g0091681 Rosa chinensis HOM05D002350 ORTHO05D000091 1.4e-07 60.1 49 53.1
AUR62042309 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.8e-07 59.7 62 45.2
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 2.3e-07 59.3 119 35.3
CANSAT56G4254 Cannabis sativa HOM05D002350 ORTHO05D000091 4.0e-07 58.5 74 35.1
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 2.0e-06 56.2 84 34.5
COL.COLO4_34762 Corchorus olitorius HOM05D002350 ORTHO05D000091 3.4e-06 55.5 53 47.2
Hund09132 Selenicereus undatus HOM05D002350 ORTHO05D000091 4.4e-06 55.1 93 35.5
AagrBONN_evm.TU.Sc2ySwM_368.2512 Anthoceros agrestis HOM05D002350 ORTHO05D000091 7.5e-06 54.3 104 30.8


User provided reference genes

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