Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.0e-224 780.8 397 100.0
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 2.5e-223 778.5 397 99.7
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 7.1e-170 600.9 395 74.9
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.7e-169 599.0 397 75.8
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 7.6e-164 580.9 395 75.4
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 4.6e-161 571.6 395 72.7
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 2.6e-156 555.8 472 61.4
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 2.7e-137 492.7 382 64.9
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 4.4e-135 485.3 395 61.3
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 4.1e-133 478.8 393 62.8
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 1.4e-128 463.8 394 57.6
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.9e-128 462.2 394 59.4
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 9.7e-127 457.6 351 64.1
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 2.2e-126 456.4 389 57.6
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 8.2e-126 454.5 355 62.5
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 8.2e-126 454.5 363 60.9
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.4e-125 453.8 398 56.8
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.1e-125 452.6 405 57.8
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 1.6e-124 450.3 396 57.6
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 4.5e-124 448.7 354 61.6
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 1.0e-123 447.6 397 57.7
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 1.0e-123 447.6 395 59.0
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.3e-123 447.2 390 57.9
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 3.6e-121 439.1 367 63.8
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 8.0e-121 438.0 360 58.9
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 3.0e-120 436.0 394 56.6
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.0e-119 433.3 393 55.2
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 3.4e-119 432.6 391 56.3
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 7.5e-119 431.4 396 55.8
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 1.7e-118 430.3 355 58.0
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 7.7e-116 421.4 357 61.1
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 1.0e-115 421.0 389 57.1
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 1.3e-115 420.6 392 55.4
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 1.7e-115 420.2 373 56.6
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 2.1e-113 413.3 393 56.5
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 8.8e-112 407.9 373 57.1
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.2e-111 407.5 338 58.0
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 1.2e-111 407.5 393 56.7
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 1.2e-111 407.5 330 58.5
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.5e-111 407.1 341 59.5
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 1.3e-110 404.1 375 54.7
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 8.3e-110 401.4 382 54.7
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 1.4e-109 400.6 375 55.5
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 3.1e-109 399.4 383 52.5
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 1.2e-108 397.5 374 55.1
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 3.5e-108 396.0 337 58.5
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 7.7e-108 394.8 298 63.1
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.0e-107 394.4 344 56.1
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 2.3e-107 393.3 333 58.9
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 2.9e-107 392.9 386 51.0
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 6.6e-107 391.7 345 55.7
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 1.1e-106 391.0 370 54.1
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 1.9e-106 390.2 340 55.9
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.6e-105 387.1 360 54.2
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 2.1e-105 386.7 336 58.0
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 4.7e-105 385.6 382 55.5
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.0e-104 384.4 375 53.9
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 1.4e-104 384.0 382 55.0
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 1.8e-104 383.6 372 51.1
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 2.3e-104 383.3 340 55.6
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 1.2e-103 380.9 398 52.3
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.0e-103 380.2 393 51.4
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.4e-103 379.4 367 53.1
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 1.8e-101 373.6 358 53.6
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 5.4e-101 372.1 370 50.3
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 3.5e-100 369.4 340 53.5
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 5.9e-100 368.6 366 51.9
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.7e-99 367.1 358 52.8
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 6.6e-99 365.2 370 49.7
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.9e-98 363.6 385 49.4
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 3.3e-98 362.8 355 53.0
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 7.3e-98 361.7 370 49.2
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.8e-97 359.8 365 51.0
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 6.1e-97 358.6 386 49.0
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 8.0e-97 358.2 382 49.2
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 1.8e-96 357.1 370 48.9
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 1.8e-96 357.1 370 48.6
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.3e-96 356.7 372 50.0
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 2.3e-96 356.7 370 48.6
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 3.4e-95 352.8 405 47.9
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 2.7e-92 343.2 348 50.0
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.7e-92 343.2 390 48.5
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 3.3e-90 336.3 354 49.2
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 2.1e-89 333.6 327 50.5
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 1.2e-87 327.8 455 41.5
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 7.5e-87 325.1 293 56.0
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 2.2e-86 323.6 441 43.8
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 3.1e-80 303.1 242 61.6
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 3.1e-80 303.1 337 43.3
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 1.2e-79 301.2 248 60.1
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 5.4e-77 292.4 335 44.8
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 9.2e-77 291.6 326 46.3
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.3e-65 254.6 280 50.0
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 2.1e-65 253.8 217 58.1
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 6.9e-64 248.8 302 47.7
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 5.4e-61 239.2 286 42.7
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 6.0e-60 235.7 248 51.6
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 7.9e-60 235.3 312 39.4
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 3.9e-59 233.0 179 62.6
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 7.3e-58 228.8 202 58.4
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 2.8e-57 226.9 365 39.2
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.9e-54 216.9 163 66.9
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 3.2e-53 213.4 250 45.2
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.5e-45 187.2 130 72.3
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.6e-44 183.0 344 36.0
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 7.9e-44 182.2 231 45.5
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 6.3e-33 146.0 140 57.1
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 8.2e-33 145.6 249 34.9
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 1.8e-32 144.4 132 53.8
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.2e-29 133.7 254 34.6
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 1.8e-27 127.9 183 41.0
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 2.0e-26 124.4 198 33.8
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 2.6e-23 114.0 284 31.3
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.0e-19 100.5 84 52.4
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 2.6e-18 97.4 92 50.0
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 2.6e-18 97.4 99 46.5
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 7.0e-16 89.4 76 52.6
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.9e-14 84.0 70 52.9
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.6e-10 70.9 98 46.9
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 9.7e-10 68.9 109 41.3
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 9.7e-10 68.9 98 45.9
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.3e-09 68.6 98 45.9
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.7e-09 68.2 98 45.9
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 3.5e-07 60.5 51 56.9


User provided reference genes

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