Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.8e-154 548.5 270 100.0
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.0e-107 392.9 245 82.9
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.2e-97 359.0 244 77.0
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.6e-96 356.7 244 75.8
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.4e-92 342.8 260 70.8
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.1e-84 315.8 260 68.8
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 7.2e-81 304.7 261 62.5
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 1.8e-79 300.1 261 62.1
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.1e-78 297.4 266 59.8
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 1.5e-78 297.0 261 60.9
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 1.2e-75 287.3 261 58.6
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 1.4e-73 280.4 261 56.3
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 1.9e-73 280.0 267 55.8
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 2.1e-72 276.6 261 57.9
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 1.0e-71 274.2 261 55.6
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.3e-71 273.1 257 58.8
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 2.3e-71 273.1 262 55.7
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 8.8e-71 271.2 261 56.3
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.1e-70 270.8 260 55.4
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.5e-70 270.4 261 56.3
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 2.0e-70 270.0 260 55.0
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 3.3e-70 269.2 260 55.0
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 4.4e-70 268.9 261 54.4
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 5.7e-70 268.5 261 56.3
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 1.3e-69 267.3 261 54.8
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 2.4e-68 263.1 261 55.9
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.4e-68 263.1 260 53.5
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 2.4e-68 263.1 261 54.8
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 3.1e-68 262.7 261 54.4
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 3.1e-68 262.7 261 52.5
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 3.1e-68 262.7 257 54.5
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 7.0e-68 261.5 257 55.3
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.2e-67 260.8 261 53.6
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 2.0e-67 260.0 261 54.8
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 2.0e-67 260.0 261 55.2
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.6e-67 259.6 257 54.1
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 7.7e-67 258.1 255 55.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.0e-66 257.7 262 53.8
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 1.0e-66 257.7 261 53.6
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 1.3e-66 257.3 261 54.0
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 1.3e-66 257.3 261 54.4
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 3.8e-66 255.8 261 54.0
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.8e-66 255.8 261 54.0
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.8e-66 255.8 261 54.0
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 5.0e-66 255.4 253 54.5
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 8.5e-66 254.6 261 53.6
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 8.5e-66 254.6 261 53.3
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 1.1e-65 254.2 255 53.7
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 1.1e-65 254.2 261 53.6
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 1.1e-65 254.2 256 53.5
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 1.5e-65 253.8 261 51.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 1.9e-65 253.4 261 52.9
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 1.9e-65 253.4 266 52.3
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 2.5e-65 253.1 261 52.9
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 3.2e-65 252.7 261 53.6
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 5.5e-65 251.9 261 53.3
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 5.5e-65 251.9 261 53.3
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 7.2e-65 251.5 261 53.3
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 7.2e-65 251.5 257 54.9
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 1.2e-64 250.8 261 51.7
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 1.6e-64 250.4 253 54.5
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 1.6e-64 250.4 247 55.1
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 1.6e-64 250.4 255 52.2
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 2.7e-64 249.6 261 52.9
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 2.7e-64 249.6 253 53.8
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 2.7e-64 249.6 247 54.7
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 3.6e-64 249.2 261 52.5
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 3.6e-64 249.2 261 52.5
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 3.6e-64 249.2 247 54.7
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 4.7e-64 248.8 261 50.6
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 6.1e-64 248.4 257 52.9
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 6.1e-64 248.4 251 53.8
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 8.0e-64 248.1 261 54.0
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.4e-63 247.3 247 54.7
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 1.4e-63 247.3 253 54.2
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 4.0e-63 245.7 261 51.3
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 4.0e-63 245.7 261 51.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 4.0e-63 245.7 253 53.4
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 1.1e-62 244.2 261 51.0
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.5e-62 243.8 247 53.8
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 1.5e-62 243.8 261 51.0
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 2.0e-62 243.4 248 52.8
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 2.6e-62 243.0 255 51.8
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 2.6e-62 243.0 255 51.8
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 2.6e-62 243.0 255 51.8
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.6e-62 243.0 263 51.7
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 3.3e-62 242.7 261 51.3
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 3.3e-62 242.7 261 51.0
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 4.4e-62 242.3 254 52.0
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 4.4e-62 242.3 261 50.6
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 5.7e-62 241.9 261 53.6
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 7.4e-62 241.5 261 52.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 7.4e-62 241.5 263 49.8
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 9.7e-62 241.1 261 52.1
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 9.7e-62 241.1 248 54.0
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 1.7e-61 240.4 261 51.7
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 3.7e-61 239.2 262 50.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 4.8e-61 238.8 246 53.7
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 4.8e-61 238.8 261 51.0
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 2.4e-60 236.5 261 49.8
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 2.4e-60 236.5 255 50.2
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 5.3e-60 235.3 255 52.9
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.2e-59 234.2 246 52.0
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 1.2e-59 234.2 240 52.5
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 3.5e-59 232.6 261 49.8
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.7e-58 230.3 260 48.5
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 1.7e-58 230.3 260 48.5
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 2.9e-58 229.6 246 50.8
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 2.9e-58 229.6 246 50.8
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 2.9e-58 229.6 255 49.0
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 1.5e-57 227.3 248 50.4
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 1.5e-57 227.3 248 50.4
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.5e-57 227.3 254 49.2
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 7.2e-57 224.9 261 49.4
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.2e-56 224.2 255 48.2
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 2.8e-45 186.4 254 41.7
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.4e-44 184.1 267 43.1
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.9e-41 173.7 267 36.7
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.1e-40 168.7 261 39.1
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.5e-38 164.1 253 37.5
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 2.6e-38 163.3 239 41.8
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 6.4e-37 158.7 261 37.2
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.3e-29 134.4 261 35.6
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 7.5e-22 108.6 234 31.2
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 2.3e-18 97.1 102 53.9
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 2.3e-18 97.1 102 53.9
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 4.0e-15 86.3 56 73.2
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-14 84.3 62 72.6
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-14 84.3 62 72.6
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-14 84.3 62 72.6
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.5e-14 84.3 62 72.6
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.4e-14 82.8 62 71.0
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-12 78.2 62 69.4


User provided reference genes

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