Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 4.8e-128 461.1 217 100.0
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.3e-114 415.6 196 100.0
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 2.1e-83 312.8 196 73.0
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 3.4e-81 305.4 196 72.4
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 1.3e-77 293.5 250 58.0
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.3e-77 292.7 196 73.5
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.3e-69 266.9 196 66.3
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 5.6e-68 261.5 208 59.1
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 2.8e-67 259.2 196 61.7
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 2.2e-64 249.6 197 60.9
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 7.1e-63 244.6 195 58.5
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 2.1e-62 243.0 197 61.9
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 7.8e-62 241.1 195 59.0
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 1.0e-61 240.7 195 59.0
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 3.0e-61 239.2 197 61.9
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.9e-61 238.8 195 56.9
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 5.1e-61 238.4 195 58.5
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.5e-60 236.9 197 59.9
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 3.3e-60 235.7 197 58.4
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 4.3e-60 235.3 197 61.4
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 2.1e-59 233.0 196 56.6
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 2.8e-59 232.6 197 61.4
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 3.6e-59 232.3 196 59.2
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.4e-58 230.3 195 58.5
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 2.4e-58 229.6 197 58.9
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 2.4e-58 229.6 195 54.9
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 2.4e-58 229.6 195 54.9
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.1e-58 229.2 195 55.4
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 6.9e-58 228.0 197 59.4
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 8.9e-58 227.6 197 58.4
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.5e-57 226.9 197 59.4
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 2.0e-57 226.5 197 58.9
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 2.6e-57 226.1 197 59.4
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 2.6e-57 226.1 197 58.4
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 2.6e-57 226.1 195 56.9
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 3.4e-57 225.7 195 58.5
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 3.4e-57 225.7 197 58.9
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 4.4e-57 225.3 195 53.8
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 1.3e-56 223.8 195 57.9
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 3.8e-56 222.2 195 55.4
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.8e-56 222.2 197 57.9
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 4.9e-56 221.9 197 57.9
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 8.4e-56 221.1 197 57.4
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 1.9e-55 219.9 197 56.9
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 5.4e-55 218.4 163 60.7
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 1.2e-54 217.2 197 56.9
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 1.6e-54 216.9 196 56.6
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 1.6e-54 216.9 195 53.8
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 6.0e-54 214.9 197 57.4
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 7.8e-54 214.5 208 52.4
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 1.0e-53 214.2 195 52.8
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 2.3e-53 213.0 196 55.6
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 3.3e-52 209.1 201 52.2
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 4.3e-52 208.8 196 55.1
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 9.6e-52 207.6 200 52.0
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.3e-51 207.2 184 59.8
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 2.8e-51 206.1 197 56.9
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 6.2e-51 204.9 195 54.4
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 8.1e-51 204.5 166 57.8
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 1.4e-50 203.8 195 52.8
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.4e-50 203.8 197 52.8
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 1.4e-50 203.8 195 53.3
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.8e-50 203.4 194 54.1
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.8e-50 203.4 194 54.1
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.1e-50 202.6 195 52.8
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 4.0e-50 202.2 206 51.9
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 4.0e-50 202.2 194 53.6
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 6.9e-50 201.4 199 50.3
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 9.0e-50 201.1 196 51.5
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 9.0e-50 201.1 196 51.5
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 9.0e-50 201.1 196 54.1
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.2e-49 200.7 195 53.3
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.2e-49 200.7 195 53.3
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.2e-49 200.7 195 53.3
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.2e-49 200.7 195 51.3
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 4.5e-49 198.7 199 53.3
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 5.8e-49 198.4 197 53.3
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 5.8e-49 198.4 197 53.3
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 9.9e-49 197.6 192 53.6
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 1.7e-48 196.8 194 51.0
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 2.2e-48 196.4 194 52.6
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 6.4e-48 194.9 194 51.0
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 8.4e-48 194.5 199 52.8
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 8.4e-48 194.5 200 51.5
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.4e-47 193.7 198 54.0
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.4e-47 193.7 199 49.2
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.9e-47 193.4 197 52.8
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 1.9e-47 193.4 168 57.7
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 9.3e-47 191.0 207 49.8
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 9.3e-47 191.0 197 49.7
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 1.2e-46 190.7 217 47.9
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.2e-46 190.7 194 52.6
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 5.1e-45 185.3 200 49.5
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 8.7e-45 184.5 143 65.0
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.1e-44 184.1 195 47.2
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 9.6e-44 181.0 196 49.5
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.3e-43 180.6 197 49.2
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 4.0e-42 175.6 124 69.4
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 5.3e-42 175.3 199 47.2
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 9.0e-42 174.5 135 60.0
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 1.5e-41 173.7 171 52.6
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.0e-37 161.0 196 44.4
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.3e-37 160.6 167 51.5
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 3.0e-37 159.5 202 39.1
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 3.9e-37 159.1 141 51.1
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 5.1e-37 158.7 178 42.7
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 8.7e-37 157.9 138 52.2
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 2.5e-36 156.4 134 57.5
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 3.3e-36 156.0 144 54.9
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 4.3e-36 155.6 107 64.5
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 3.7e-35 152.5 182 46.7
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 1.5e-33 147.1 190 42.1
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 5.5e-31 138.7 193 45.1
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 2.1e-30 136.7 147 43.5
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 1.0e-29 134.4 157 42.7
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-29 133.3 130 51.5
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.7e-29 131.7 130 51.5
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-28 131.0 130 51.5
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-28 131.0 130 51.5
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.0e-25 120.2 75 73.3
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.0e-24 115.5 127 47.2
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 2.5e-23 113.2 76 65.8
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 4.6e-22 109.0 121 51.2
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 4.6e-22 109.0 97 48.5
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 3.7e-19 99.4 127 40.2
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 5.3e-18 95.5 124 44.4
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.4e-17 92.8 105 43.8
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 8.5e-16 88.2 58 62.1
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 5.5e-15 85.5 168 34.5
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 3.9e-13 79.3 127 33.1
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.1e-10 71.2 82 46.3
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.8e-10 70.5 63 57.1
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 6.5e-08 62.0 91 40.7
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 1.2e-06 57.8 71 43.7
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 6.1e-06 55.5 42 59.5
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 6.1e-06 55.5 29 72.4


User provided reference genes

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