Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 7.1e-239 831.2 877 100.0
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.7e-144 517.7 875 73.3
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 8.1e-142 508.8 874 82.2
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.4e-138 498.0 875 81.8
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.1e-126 457.6 873 77.9
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 4.1e-125 453.4 871 79.3
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 2.6e-124 450.7 870 76.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.0e-123 448.7 877 78.8
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 2.9e-123 447.2 887 77.5
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 2.1e-121 441.0 873 79.0
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 9.4e-114 415.6 871 77.6
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 9.4e-114 415.6 871 71.3
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 6.1e-113 412.9 872 77.2
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 3.0e-112 410.6 870 77.2
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 6.7e-112 409.5 876 74.9
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 4.8e-110 403.3 872 74.5
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.2e-108 398.7 879 70.6
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 1.5e-108 398.3 879 76.5
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 1.1e-106 392.1 879 75.1
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 2.1e-105 387.9 880 75.5
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 5.1e-104 383.3 865 75.7
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 5.1e-104 383.3 873 75.6
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 4.8e-102 376.7 876 72.0
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 4.8e-102 376.7 875 75.0
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.1e-101 375.6 871 72.6
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.1e-101 375.6 873 75.9
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 2.4e-101 374.4 877 74.7
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 5.3e-101 373.2 865 74.9
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 7.0e-101 372.9 871 75.8
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 7.7e-100 369.4 871 75.5
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.3e-99 368.6 871 75.5
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 1.9e-98 364.8 876 71.2
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 4.2e-98 363.6 878 68.0
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 2.7e-97 360.9 874 75.3
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 8.0e-97 359.4 877 74.7
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 1.1e-95 355.5 877 74.7
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.1e-95 355.5 875 71.7
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 2.0e-95 354.8 879 72.9
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 2.6e-95 354.4 876 70.7
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 3.3e-95 354.0 874 75.2
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 3.7e-94 350.5 877 68.1
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 7.0e-93 346.3 877 71.0
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 4.5e-92 343.6 887 61.7
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 5.9e-92 343.2 872 66.6
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 6.5e-91 339.7 871 71.1
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 4.2e-90 337.0 875 72.7
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 5.5e-90 336.7 875 74.7
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 5.5e-90 336.7 878 72.1
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.1e-89 334.7 836 76.4
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 2.7e-89 334.3 875 72.9
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 2.7e-89 334.3 882 73.2
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 8.8e-88 329.3 880 72.4
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 7.5e-87 326.2 873 64.6
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 2.2e-86 324.7 875 72.0
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 3.7e-86 323.9 836 75.8
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 6.3e-86 323.2 875 65.0
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 6.3e-86 323.2 875 65.0
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 8.3e-86 322.8 876 72.1
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.8e-85 321.6 886 62.3
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 2.0e-84 318.2 876 71.8
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 4.5e-84 317.0 862 68.8
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.7e-83 315.1 875 71.9
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.9e-82 311.6 875 71.7
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 1.9e-82 311.6 875 71.5
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 5.5e-82 310.1 846 62.4
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.6e-81 308.5 880 63.4
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 4.7e-81 307.0 880 67.4
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 4.7e-81 307.0 873 71.6
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 3.4e-79 300.8 872 64.4
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 2.8e-78 297.7 366 76.0
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 1.4e-77 295.4 441 62.4
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 1.4e-77 295.4 874 70.8
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 5.4e-77 293.5 878 70.7
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.2e-76 292.4 847 69.2
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 1.2e-76 292.4 366 75.4
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 4.5e-76 290.4 875 70.2
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.3e-72 278.1 802 75.3
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 5.2e-72 276.9 873 70.8
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 7.5e-71 273.1 202 68.3
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 9.8e-71 272.7 784 77.3
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.8e-69 268.5 862 68.4
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 3.9e-67 260.8 875 68.5
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.1e-66 259.2 817 71.5
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 1.0e-64 252.7 751 77.1
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 6.8e-64 250.0 881 64.1
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.6e-63 248.1 865 70.1
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 9.8e-63 246.1 879 66.8
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 3.5e-60 237.7 829 68.0
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.3e-59 235.7 364 68.1
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 5.6e-58 230.3 891 53.1
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 5.8e-55 220.3 862 64.4
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 1.3e-51 209.1 877 58.3
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 5.6e-42 177.2 380 59.2
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 7.3e-42 176.8 339 38.1
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 5.8e-39 167.2 171 52.0
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 7.6e-39 166.8 863 64.5
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 8.4e-38 163.3 878 58.3
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 9.3e-37 159.8 744 73.4
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 4.3e-34 151.0 187 44.4
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 5.8e-31 140.6 327 64.8
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 2.7e-28 131.7 193 40.9
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 3.0e-27 128.3 393 53.7
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 3.6e-25 121.3 146 46.6
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 4.9e-22 110.9 107 53.3
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 2.3e-19 102.1 101 53.5
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 6.9e-16 90.5 128 46.1
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 8.2e-09 67.0 64 50.0
PGR031G2661 Punica granatum HOM05D002453 ORTHO05D008746 3.4e-07 61.6 174 32.8
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 7.6e-07 60.5 71 40.8
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 2.9e-06 58.5 167 28.1
Glyma.07G160400 Glycine max HOM05D007409 ORTHO05D009264 2.9e-06 58.5 158 29.7


User provided reference genes

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