Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 2.9e-135 485.3 266 100.0
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 2.9e-103 379.0 281 73.3
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 1.2e-101 373.6 268 75.7
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 1.4e-89 333.6 279 71.7
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 1.0e-87 327.4 281 71.9
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 1.9e-86 323.2 274 66.4
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 6.4e-82 308.1 288 63.9
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 4.1e-81 305.4 271 66.1
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 7.1e-81 304.7 271 65.7
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 9.2e-81 304.3 271 65.7
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 3.5e-80 302.4 283 62.9
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 6.0e-80 301.6 282 68.1
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 1.0e-79 300.8 270 68.5
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 3.9e-79 298.9 279 63.8
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 2.5e-78 296.2 272 65.1
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 5.6e-78 295.0 277 67.9
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 2.8e-77 292.7 271 67.2
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 2.8e-77 292.7 276 64.1
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 3.6e-77 292.4 283 61.5
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 4.7e-77 292.0 271 67.2
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 1.1e-76 290.8 280 62.9
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 3.1e-76 289.3 271 66.8
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 3.1e-76 289.3 274 66.4
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 4.0e-76 288.9 271 66.8
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 5.2e-76 288.5 271 63.1
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 7.6e-75 284.6 287 61.7
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 4.1e-73 278.9 286 59.4
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 4.1e-73 278.9 283 58.0
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 1.2e-72 277.3 273 61.2
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 1.6e-72 276.9 284 59.9
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 2.7e-72 276.2 284 59.9
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 6.0e-72 275.0 270 61.5
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 1.0e-71 274.2 287 60.6
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 3.3e-70 269.2 273 61.9
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 3.3e-70 269.2 284 60.2
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 1.6e-69 266.9 270 60.0
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 1.1e-68 264.2 280 58.9
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 1.1e-68 264.2 281 59.4
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 2.4e-68 263.1 279 59.1
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 5.2e-68 261.9 279 59.1
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 6.9e-68 261.5 283 58.7
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 1.5e-67 260.4 289 57.1
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 2.0e-67 260.0 298 57.4
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 3.4e-67 259.2 285 59.6
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 9.9e-67 257.7 275 58.5
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 1.4e-65 253.8 200 70.0
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 2.4e-65 253.1 276 58.7
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 3.2e-65 252.7 289 55.4
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 4.2e-65 252.3 267 59.2
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 1.6e-64 250.4 279 57.7
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 1.3e-63 247.3 272 58.1
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 3.0e-63 246.1 282 57.8
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 3.9e-63 245.7 252 61.9
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 5.1e-63 245.4 277 57.4
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 1.5e-62 243.8 270 60.4
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 4.3e-62 242.3 279 58.8
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 2.1e-61 240.0 268 57.1
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 3.6e-61 239.2 259 60.2
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 6.9e-60 235.0 288 56.6
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 9.0e-60 234.6 252 66.7
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 9.0e-60 234.6 275 54.9
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 1.2e-59 234.2 288 57.3
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 4.5e-59 232.3 289 54.7
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 9.3e-57 224.6 263 57.0
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 2.7e-56 223.0 269 55.4
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 3.0e-55 219.5 308 51.3
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 1.9e-54 216.9 288 54.9
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 2.5e-54 216.5 242 57.9
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 9.6e-54 214.5 302 49.7
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 1.3e-53 214.2 282 51.8
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 3.7e-53 212.6 244 56.6
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 6.2e-53 211.8 268 52.6
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 3.4e-51 206.1 275 52.4
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 3.4e-51 206.1 292 51.7
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 4.5e-51 205.7 304 50.7
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 1.7e-50 203.8 286 49.0
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 2.9e-50 203.0 258 55.0
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.9e-49 200.3 280 50.7
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 4.2e-49 199.1 277 50.2
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 9.3e-49 198.0 274 49.6
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 3.0e-47 193.0 173 65.9
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 3.9e-47 192.6 237 54.9
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 3.9e-47 192.6 270 49.3
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 6.7e-47 191.8 270 48.5
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 8.7e-47 191.4 270 49.3
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 3.3e-46 189.5 271 49.1
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 1.6e-45 187.2 270 47.8
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 3.7e-45 186.0 295 47.5
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 4.8e-45 185.7 274 47.8
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 4.8e-45 185.7 250 53.6
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 1.4e-44 184.1 174 70.1
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 7.6e-43 178.3 271 46.1
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 8.4e-42 174.9 243 51.9
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 2.5e-41 173.3 247 51.4
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 4.2e-41 172.6 242 50.4
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 2.7e-40 169.9 276 46.4
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 6.0e-40 168.7 264 49.2
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 2.3e-39 166.8 264 45.5
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 3.0e-39 166.4 244 50.8
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.5e-38 164.1 225 52.9
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 1.3e-37 161.0 252 48.4
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 3.8e-34 149.4 248 46.4
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 4.6e-32 142.5 107 74.8
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 1.9e-30 137.1 186 53.8
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 3.7e-29 132.9 276 38.0
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 2.2e-26 123.6 341 34.9
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 3.6e-24 116.3 227 41.9
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 1.4e-20 104.4 98 55.1
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 1.1e-12 78.2 245 35.9
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 1.4e-12 77.8 235 35.3
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 5.3e-12 75.9 237 34.6
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 5.5e-09 65.9 91 44.0
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 2.1e-08 63.9 84 45.2
Rhsim01G0284900 Rhododendron simsii HOM05D000113 ORTHO05D008110 1.8e-07 60.8 31 90.3
vmacro15008 Vaccinium macrocarpon HOM05D002674 ORTHO05D426855 4.0e-07 59.7 35 82.9


User provided reference genes

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