Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049731 Camellia sinensis var. sinensis HOM05D017641 ORTHO05D017714 5.9e-135 484.2 242 100.0
CSS0000148 Camellia sinensis var. sinensis HOM05D017641 ORTHO05D017714 2.1e-124 449.1 255 91.4
CSS0048342 Camellia sinensis var. sinensis HOM05D017641 ORTHO05D017714 1.5e-85 320.1 240 70.4
CSS0011647 Camellia sinensis var. sinensis HOM05D017641 ORTHO05D017714 1.3e-84 317.0 192 84.9
CSS0001489 Camellia sinensis var. sinensis HOM05D017641 ORTHO05D017714 3.6e-76 288.9 192 79.2
CSS0012585 Camellia sinensis var. sinensis HOM05D017641 ORTHO05D017714 2.6e-74 282.7 228 69.3
CSS0049407 Camellia sinensis var. sinensis HOM05D017641 ORTHO05D017714 3.4e-58 229.2 195 68.7
CSS0046683 Camellia sinensis var. sinensis HOM05D002780 ORTHO05D003254 9.1e-19 98.2 54 90.7
CSS0006289 Camellia sinensis var. sinensis HOM05D002780 ORTHO05D003254 2.7e-18 96.7 54 88.9
CSS0028953 Camellia sinensis var. sinensis HOM05D002780 ORTHO05D003254 1.7e-17 94.0 54 83.3
Actinidia19555 Actinidia chinensis HOM05D002780 ORTHO05D003254 1.4e-14 84.3 51 80.4
Actinidia37721 Actinidia chinensis HOM05D002780 ORTHO05D003254 6.8e-14 82.0 51 78.4
Dinv33284 Davidia involucrata HOM05D002780 ORTHO05D003254 1.5e-13 80.9 54 74.1
TWI60G0345 Tripterygium wilfordii HOM05D002780 ORTHO05D003254 7.5e-13 78.6 52 69.2
TWI34G1436 Tripterygium wilfordii HOM05D002780 ORTHO05D003254 1.7e-12 77.4 52 67.3
Rhsim08G0039600 Rhododendron simsii HOM05D002780 ORTHO05D003254 1.8e-11 73.9 45 77.8
GSVIVG01032996001 Vitis vinifera HOM05D002780 ORTHO05D003254 2.4e-11 73.6 52 71.2
Potri.014G145700 Populus trichocarpa HOM05D002780 ORTHO05D003254 3.1e-11 73.2 48 70.8
Thecc.04G046800 Theobroma cacao HOM05D002780 ORTHO05D003254 9.2e-11 71.6 47 74.5
Hma1.2p1_0421F.1_g149980 Hydrangea macrophylla HOM05D002780 ORTHO05D003254 1.2e-10 71.2 52 69.2
Atru.chr6.2651 Acer truncatum HOM05D002780 ORTHO05D003254 1.6e-10 70.9 47 72.3
Atru.chr6.2683 Acer truncatum HOM05D002780 ORTHO05D003254 1.6e-10 70.9 47 72.3
Sed0007789 Sechium edule HOM05D002780 ORTHO05D003254 2.0e-10 70.5 46 76.1
Glyma.19G102100 Glycine max HOM05D002780 ORTHO05D003254 3.5e-10 69.7 49 63.3
Potri.004G180600 Populus trichocarpa HOM05D002780 ORTHO05D017714 5.9e-10 68.9 48 68.8
ClCG01G007810 Citrullus lanatus HOM05D002780 ORTHO05D003254 1.0e-09 68.2 47 72.3
Duzib147G0062 Durio zibethinus HOM05D002780 ORTHO05D003254 1.0e-09 68.2 47 68.1
Lj7A616T60 Lonicera japonica HOM05D002780 ORTHO05D003254 1.0e-09 68.2 52 65.4
Lalb_Chr22g0359951 Lupinus albus HOM05D002780 ORTHO05D003254 1.0e-09 68.2 49 67.3
Glyma.16G049300 Glycine max HOM05D002780 ORTHO05D003254 1.3e-09 67.8 49 65.3
MD09G1003700 Malus domestica HOM05D002780 ORTHO05D003254 1.3e-09 67.8 48 68.8
Psat3g093880 Pisum sativum HOM05D002780 ORTHO05D003254 1.3e-09 67.8 49 63.3
Potri.002G236800 Populus trichocarpa HOM05D002780 ORTHO05D003254 1.7e-09 67.4 47 68.1
Sabra02G0180400 Salix brachista HOM05D002780 ORTHO05D003254 1.7e-09 67.4 47 68.1
Ca_08133_v3 Cicer arietinum L. HOM05D002780 ORTHO05D003254 2.3e-09 67.0 49 59.2
Glyma.02G066100 Glycine max HOM05D002780 ORTHO05D003254 2.3e-09 67.0 49 65.3
Nitab4.5_0000640g0090 Nicotiana tabacum HOM05D002780 ORTHO05D003254 2.9e-09 66.6 49 69.4
Lj1g0018728 Lotus japonicus HOM05D002780 ORTHO05D003254 3.8e-09 66.2 49 65.3
Prupe.3G312900 Prunus persica HOM05D002780 ORTHO05D003254 3.8e-09 66.2 46 71.7
Cpa.g.sc70.76 Carica papaya HOM05D002780 ORTHO05D003254 5.0e-09 65.9 47 68.1
Ciclev10014778m.g Citrus clementina HOM05D002780 ORTHO05D003254 6.6e-09 65.5 45 66.7
Cc07_g01220 Coffea canephora HOM05D002780 ORTHO05D003254 6.6e-09 65.5 54 68.5
Duzib264G0273 Durio zibethinus HOM05D002780 ORTHO05D003254 8.6e-09 65.1 43 74.4
Glyma.16G147300 Glycine max HOM05D002780 ORTHO05D003254 8.6e-09 65.1 52 61.5
MD17G1007300 Malus domestica HOM05D002780 ORTHO05D003254 8.6e-09 65.1 48 66.7
Eucgr.I01605 Eucalyptus grandis HOM05D002780 ORTHO05D003254 1.1e-08 64.7 47 68.1
Lalb_Chr02g0156831 Lupinus albus HOM05D002780 ORTHO05D003254 1.1e-08 64.7 49 61.2
Ca_13677_v3 Cicer arietinum L. HOM05D002780 ORTHO05D003254 1.9e-08 63.9 49 63.3
Peaxi162Scf00937g00028 Petunia axillaris HOM05D002780 ORTHO05D003254 1.9e-08 63.9 47 72.3
TAR629G2066 Trochodendron aralioides HOM05D002780 ORTHO05D003254 2.5e-08 63.5 48 68.8
MELO3C005112.2 Cucumis melo HOM05D002780 ORTHO05D003254 3.3e-08 63.2 48 70.8
CsaV3_5G024880 Cucumis sativus L. HOM05D002780 ORTHO05D003254 3.3e-08 63.2 47 70.2
Lalb_Chr06g0173821 Lupinus albus HOM05D002780 ORTHO05D003254 3.3e-08 63.2 47 63.8
DCAR_014474 Daucus carota HOM05D002780 ORTHO05D003254 4.3e-08 62.8 45 73.3
Peaxi162Scf00275g00216 Petunia axillaris HOM05D002780 ORTHO05D003254 4.3e-08 62.8 49 65.3
Prupe.1G216900 Prunus persica HOM05D002780 ORTHO05D003254 4.3e-08 62.8 50 66.0
Sed0020339 Sechium edule HOM05D002780 ORTHO05D003254 4.3e-08 62.8 46 69.6
TPR.G36674 Trifolium pratense HOM05D002780 ORTHO05D003254 4.3e-08 62.8 47 63.8
arahy.Tifrunner.gnm1.ann1.X5ZWNG Arachis hypogaea HOM05D002780 ORTHO05D003254 5.6e-08 62.4 45 66.7
arahy.Tifrunner.gnm1.ann1.X87CF4 Arachis hypogaea HOM05D002780 ORTHO05D003254 5.6e-08 62.4 45 66.7
MD16G1129600 Malus domestica HOM05D002780 ORTHO05D003254 5.6e-08 62.4 50 66.0
Oeu035382.1 Olea europaea HOM05D002780 ORTHO05D003254 5.6e-08 62.4 44 72.7
CSS0037878 Camellia sinensis var. sinensis HOM05D002780 ORTHO05D003254 7.3e-08 62.0 51 60.8
CSS0045995 Camellia sinensis var. sinensis HOM05D002780 ORTHO05D003254 7.3e-08 62.0 51 60.8
CAN.G282.119 Capsicum annuum HOM05D002780 ORTHO05D003254 9.5e-08 61.6 47 66.0
COL.COLO4_13364 Corchorus olitorius HOM05D002780 ORTHO05D003254 9.5e-08 61.6 47 68.1
Gohir.A07G232400 Gossypium hirsutum HOM05D002780 ORTHO05D003254 9.5e-08 61.6 37 75.7
Gohir.D07G239600 Gossypium hirsutum HOM05D002780 ORTHO05D003254 9.5e-08 61.6 37 75.7
Gorai.001G275700 Gossypium raimondii HOM05D002780 ORTHO05D003254 9.5e-08 61.6 37 75.7
Lj2g0001081 Lotus japonicus HOM05D002780 ORTHO05D003254 9.5e-08 61.6 49 63.3
PGR142G0536 Punica granatum HOM05D002780 ORTHO05D003254 9.5e-08 61.6 49 65.3
Solyc01g005240.4 Solanum lycopersicum HOM05D002780 ORTHO05D003254 9.5e-08 61.6 44 70.5
Sopen01g001270 Solanum pennellii HOM05D002780 ORTHO05D003254 9.5e-08 61.6 44 70.5
PGSC0003DMG400022782 Solanum tuberosum HOM05D002780 ORTHO05D003254 9.5e-08 61.6 44 70.5
FAN02G3626 Fragaria x ananassa HOM05D002780 ORTHO05D003254 1.2e-07 61.2 46 65.2
vmacro01026 Vaccinium macrocarpon HOM05D002780 ORTHO05D003254 1.2e-07 61.2 51 58.8
FAN14G4219 Fragaria x ananassa HOM05D002780 ORTHO05D003254 1.6e-07 60.8 45 66.7
CDE02G3698 Ceratophyllum demersum HOM05D002780 ORTHO05D003254 2.1e-07 60.5 47 70.2
CDE09G0707 Ceratophyllum demersum HOM05D002780 ORTHO05D003254 2.1e-07 60.5 47 70.2
FvH4_6g54240 Fragaria vesca HOM05D002780 ORTHO05D003254 2.1e-07 60.5 46 65.2
HanXRQChr17g0550991 Helianthus annuus HOM05D002780 ORTHO05D003254 4.7e-07 59.3 36 75.0
RcHm_v2.0_Chr2g0176441 Rosa chinensis HOM05D002780 ORTHO05D003254 4.7e-07 59.3 47 61.7
Aa31LG5G11140 Aethionema arabicum HOM05D002780 ORTHO05D003254 6.1e-07 58.9 41 65.9
Dinv15387 Davidia involucrata HOM05D002780 ORTHO05D003254 6.1e-07 58.9 50 60.0
FAN05G4237 Fragaria x ananassa HOM05D002780 ORTHO05D003254 6.1e-07 58.9 46 60.9
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 8.0e-07 58.5 51 62.7
Gohir.D09G000600 Gossypium hirsutum HOM05D002780 ORTHO05D003254 8.0e-07 58.5 43 62.8
Gorai.006G000400 Gossypium raimondii HOM05D002780 ORTHO05D003254 8.0e-07 58.5 43 62.8
Lsat_1_v5_gn_0_22641 Lactuca sativa HOM05D002780 ORTHO05D003254 8.0e-07 58.5 36 72.2
Nitab4.5_0000198g0070 Nicotiana tabacum HOM05D002780 ORTHO05D003254 8.0e-07 58.5 40 72.5
Os03g0850400 Oryza sativa ssp. japonica HOM05D002780 ORTHO05D003254 8.0e-07 58.5 46 63.0
Rhsim12G0018000 Rhododendron simsii HOM05D002780 ORTHO05D003254 8.0e-07 58.5 51 56.9
Medtr6g033260 Medicago truncatula HOM05D002780 ORTHO05D003254 1.0e-06 58.2 46 60.9
Phvul.004G070100 Phaseolus vulgaris HOM05D002780 ORTHO05D003254 1.0e-06 58.2 36 72.2
ECA238G2884 Erigeron canadensis HOM05D002780 ORTHO05D003254 1.4e-06 57.8 43 65.1
FAN07G1996 Fragaria x ananassa HOM05D002780 ORTHO05D003254 1.4e-06 57.8 50 64.0
HPP92_001934 Vanilla planifolia HOM05D002780 ORTHO05D003254 1.4e-06 57.8 45 62.2
FvH4_4g22800 Fragaria vesca HOM05D002780 ORTHO05D003254 1.8e-06 57.4 49 63.3
Oeu003420.2 Olea europaea HOM05D002780 ORTHO05D003254 1.8e-06 57.4 48 64.6
ECA246G3665 Erigeron canadensis HOM05D002780 ORTHO05D003254 2.3e-06 57.0 36 72.2
HanXRQChr07g0198021 Helianthus annuus HOM05D002780 ORTHO05D003254 2.3e-06 57.0 41 65.9
Thecc.02G194200 Theobroma cacao HOM05D002780 ORTHO05D003254 2.3e-06 57.0 51 56.9
VMungo0464G1971 Vigna mungo HOM05D002780 ORTHO05D003254 2.3e-06 57.0 36 72.2
Gohir.A09G000700 Gossypium hirsutum HOM05D002780 ORTHO05D003254 3.0e-06 56.6 41 63.4
Actinidia22123 Actinidia chinensis HOM05D002780 ORTHO05D003254 4.0e-06 56.2 51 58.8
Migut.K01483 Erythranthe guttata HOM05D002780 ORTHO05D003254 4.0e-06 56.2 33 81.8
PSO017G6935 Papaver somniferum HOM05D002780 ORTHO05D003254 4.0e-06 56.2 47 66.0
PSO478G3921 Papaver somniferum HOM05D002780 ORTHO05D003254 4.0e-06 56.2 47 66.0
QL03p049700 Quercus lobata HOM05D002780 ORTHO05D003254 4.0e-06 56.2 57 59.6
RcHm_v2.0_Chr4g0429031 Rosa chinensis HOM05D002780 ORTHO05D003254 4.0e-06 56.2 50 64.0
Duzib052G0841 Durio zibethinus HOM05D002780 ORTHO05D003254 5.2e-06 55.8 51 58.8
Lsat_1_v5_gn_2_94981 Lactuca sativa HOM05D002780 ORTHO05D003254 5.2e-06 55.8 36 72.2
AT3G02020 Arabidopsis thaliana HOM05D002780 ORTHO05D003254 6.8e-06 55.5 39 66.7
SGA_v2.0_scaffold42G15916 Striga asiatica HOM05D002780 ORTHO05D003254 6.8e-06 55.5 35 71.4
SGA_v2.0_scaffold44G16950 Striga asiatica HOM05D002780 ORTHO05D003254 6.8e-06 55.5 46 58.7
unitig_52.g17688 Utricularia gibba HOM05D002780 ORTHO05D003254 6.8e-06 55.5 47 57.4
COL.COLO4_04500 Corchorus olitorius HOM05D002780 ORTHO05D003254 8.9e-06 55.1 51 54.9
Manes.11G077200 Manihot esculenta HOM05D002780 ORTHO05D003254 8.9e-06 55.1 36 69.4
Os01g0927900 Oryza sativa ssp. japonica HOM05D002780 ORTHO05D003254 8.9e-06 55.1 39 64.1
Zm00001eb064530 Zea mays HOM05D002780 ORTHO05D003254 8.9e-06 55.1 53 58.5


User provided reference genes

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