Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 4.6e-25 117.1 58 100.0
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 8.9e-21 102.8 51 100.0
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 2.6e-20 101.3 58 84.5
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.1e-18 95.9 58 82.8
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 1.9e-18 95.1 58 79.3
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 4.1e-18 94.0 58 79.3
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 5.4e-18 93.6 58 77.6
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 1.6e-17 92.0 58 81.0
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 2.0e-17 91.7 58 81.0
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 2.7e-17 91.3 59 78.0
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.7e-17 91.3 60 76.7
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 2.7e-17 91.3 60 76.7
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 3.5e-17 90.9 58 75.9
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 6.0e-17 90.1 53 81.1
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 7.8e-17 89.7 55 78.2
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 7.8e-17 89.7 55 78.2
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 7.8e-17 89.7 55 78.2
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 7.8e-17 89.7 53 81.1
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 7.8e-17 89.7 53 83.0
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 1.0e-16 89.4 58 75.9
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 1.0e-16 89.4 59 76.3
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 1.0e-16 89.4 58 75.9
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 1.0e-16 89.4 62 74.2
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 1.0e-16 89.4 54 79.6
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 1.3e-16 89.0 59 76.3
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 1.7e-16 88.6 58 74.1
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 1.7e-16 88.6 58 74.1
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.7e-16 88.6 51 84.3
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 2.3e-16 88.2 58 74.1
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 2.3e-16 88.2 58 74.1
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 2.3e-16 88.2 62 72.6
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 3.9e-16 87.4 62 75.8
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 3.9e-16 87.4 61 73.8
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 5.0e-16 87.0 58 74.1
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 5.0e-16 87.0 58 74.1
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 5.0e-16 87.0 53 79.2
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 5.0e-16 87.0 58 74.1
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 6.6e-16 86.7 58 72.4
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 6.6e-16 86.7 58 72.4
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 8.6e-16 86.3 58 72.4
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 1.5e-15 85.5 45 88.9
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 1.9e-15 85.1 57 73.7
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.5e-15 84.7 60 71.7
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 2.5e-15 84.7 58 72.4
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 3.3e-15 84.3 55 74.5
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.3e-15 84.3 60 73.3
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 4.3e-15 84.0 58 74.1
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 4.3e-15 84.0 56 73.2
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 5.6e-15 83.6 61 73.8
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 5.6e-15 83.6 61 73.8
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 9.5e-15 82.8 49 83.7
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 9.5e-15 82.8 60 71.7
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 9.5e-15 82.8 58 74.1
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 9.5e-15 82.8 57 71.9
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 9.5e-15 82.8 53 75.5
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 2.1e-14 81.6 54 75.9
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 2.1e-14 81.6 60 70.0
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 2.8e-14 81.3 57 70.2
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 3.6e-14 80.9 47 78.7
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 3.6e-14 80.9 47 78.7
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 4.7e-14 80.5 57 71.9
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 6.2e-14 80.1 47 80.9
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 6.2e-14 80.1 47 80.9
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 6.2e-14 80.1 58 69.0
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 8.1e-14 79.7 60 70.0
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 8.1e-14 79.7 47 78.7
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 8.1e-14 79.7 55 72.7
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.1e-13 79.3 60 70.0
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 1.1e-13 79.3 53 73.6
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 1.1e-13 79.3 51 72.5
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 1.4e-13 79.0 41 90.2
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 2.3e-13 78.2 57 68.4
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 3.1e-13 77.8 58 70.7
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 3.1e-13 77.8 55 61.8
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 6.8e-13 76.6 45 82.2
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 6.8e-13 76.6 45 82.2
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.4e-12 74.3 60 63.3
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 4.4e-12 73.9 47 76.6
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 5.8e-12 73.6 58 62.1
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 4.9e-11 70.5 71 54.9
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 8.3e-11 69.7 51 68.6
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.9e-10 68.6 45 80.0
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 7.1e-10 66.6 87 47.1
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 3.5e-09 64.3 37 81.1
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 2.3e-08 61.6 55 61.8
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 7.3e-07 56.6 35 77.1


User provided reference genes

Program Settings